☆15Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for nextflow-runner
Users that are interested in nextflow-runner are comparing it to the libraries listed below
Sorting:
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Mar 12, 2026Updated last week
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- Extensible quality control dashboard built around FASTQ assessment.☆15May 17, 2019Updated 6 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Nextflow Tower CLI tool☆53Mar 12, 2026Updated last week
- Interactive visualizations for differential expression☆25Dec 8, 2022Updated 3 years ago
- my bin directory☆45Sep 4, 2025Updated 6 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- python stuff I use☆20Feb 16, 2026Updated last month
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated last year
- Demultiplexing pipeline for sequencing data☆54Feb 27, 2026Updated 3 weeks ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- WebAssembly modules for genomics☆266Mar 12, 2026Updated last week
- A library for working with Python modules☆19Apr 23, 2018Updated 7 years ago
- pulsar: Parallel Utilities for Lambda Selection along a Regularization Path☆10Sep 25, 2023Updated 2 years ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated 3 weeks ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 5 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 3 years ago
- Simple Haskell simulation to determine best interval to invest in ETF's☆12Jun 13, 2017Updated 8 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 4 months ago
- Bioinformatic MCP server that wraps the most useful functions of the gget library☆26Oct 27, 2025Updated 4 months ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- ☆14Feb 17, 2019Updated 7 years ago
- Sonification middleware☆12Oct 7, 2020Updated 5 years ago
- The advanced implementation for BioChatter, using Next.js☆17Jan 17, 2025Updated last year
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago