Alternatives and similar repositories for nextflow-runner

Users that are interested in nextflow-runner are comparing it to the libraries listed below

• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆19Updated 2 years ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆51Updated last week
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆38Updated last week
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated last month
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆72Updated this week
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆50Updated this week
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆37Updated last week
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated last year
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆40Updated 2 months ago
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated 2 years ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆17Updated 4 months ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆63Updated 3 months ago
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆46Updated 6 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 7 months ago
• StaPH-B / staphb_toolkit
  Python Toolkit for using containerized programs in either Singularity or Docker
  ☆29Updated last year
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated 2 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• mbhall88 / taeper
  A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
  ☆19Updated 7 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• LooseLab / bulkvis
  ☆49Updated last year
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated 2 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆17Updated 6 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆57Updated 2 years ago