Hypercubed / DEIVALinks
Interactive Visual Analysis of differential gene expression test results
☆22Updated 8 years ago
Alternatives and similar repositories for DEIVA
Users that are interested in DEIVA are comparing it to the libraries listed below
Sorting:
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 6 years ago
- A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets☆18Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- Genomic plot in trellis layout☆40Updated last year
- Fast and accurate sequence demultiplexing☆28Updated 3 months ago
- ☆15Updated 6 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago