Hypercubed / DEIVALinks
Interactive Visual Analysis of differential gene expression test results
☆22Updated 8 years ago
Alternatives and similar repositories for DEIVA
Users that are interested in DEIVA are comparing it to the libraries listed below
Sorting:
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- common useful script☆32Updated last month
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Adapters for trimming☆30Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 5 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago