sdparekh / zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
☆273Updated 2 months ago
Related projects: ⓘ
- RNA-seq workflow using STAR and DESeq2☆321Updated last month
- Application for making ENCODE Blacklists☆261Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆301Updated last year
- TCR and BCR assembly from RNA-seq data☆270Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆179Updated 2 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆188Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆383Updated 5 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆232Updated 6 months ago
- Intro to ChIPseq using HPC☆280Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆257Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆274Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆186Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆198Updated 3 weeks ago
- Collections of library structure and sequence of popular single cell genomic methods☆417Updated last week
- GTEx & TOPMed data production and analysis pipelines☆339Updated 5 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆303Updated this week
- ENCODE ChIP-seq pipeline☆240Updated 7 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆379Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆252Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆254Updated last year
- parallel fastq-dump wrapper☆270Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆213Updated 3 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆199Updated 2 weeks ago
- 10x Genomics Single Cell Analysis☆349Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆382Updated 2 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆170Updated 2 months ago
- ☆221Updated 5 months ago
- my notes for scATACseq analysis☆114Updated 4 months ago
- ☆219Updated this week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆231Updated 2 months ago