sdparekh / zUMIsLinks
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
☆284Updated last year
Alternatives and similar repositories for zUMIs
Users that are interested in zUMIs are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆320Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆225Updated this week
- Intro to ChIPseq using HPC☆311Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- GTEx & TOPMed data production and analysis pipelines☆380Updated this week
- ENCODE ChIP-seq pipeline☆271Updated last year
- ☆138Updated 6 years ago
- RNA-seq workflow using STAR and DESeq2☆344Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆267Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆324Updated 2 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆330Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 2 weeks ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆236Updated 2 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆291Updated 2 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- ☆274Updated 9 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆194Updated 2 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- ☆205Updated last month
- ☆94Updated 4 months ago
- 10x Genomics Single Cell Analysis☆428Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆295Updated 2 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆477Updated 3 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated last week
- Single-Cell Genotyping Tool☆210Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆171Updated 4 years ago