Alternatives and similar repositories for celda:

Users that are interested in celda are comparing it to the libraries listed below

• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 4 years ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆204Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆181Updated last month
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆135Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆120Updated last week
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆135Updated 11 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆175Updated 4 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆169Updated 8 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 3 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆92Updated 3 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆155Updated 8 months ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆111Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆160Updated this week
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆181Updated 3 weeks ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆232Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆162Updated last month
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• cellgeni / batchbench
  ☆46Updated 2 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆84Updated 4 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆142Updated 3 months ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆126Updated 4 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆154Updated last year