Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
☆155Jun 26, 2026Updated last month
Alternatives and similar repositories for celda
Users that are interested in celda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆336Nov 1, 2022Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 7 years ago
- Interactively analyze single cell genomic data☆189Jan 14, 2026Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆343Apr 23, 2024Updated 2 years ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆51Jan 8, 2025Updated last year
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated 9 months ago
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 2 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 7 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆557Mar 21, 2025Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆39Updated this week
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆424Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆410Jun 16, 2026Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆81Dec 14, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆188Jun 24, 2021Updated 5 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆454Aug 3, 2026Updated last week
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 10 months ago
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- Metacell - Single-cell mRNA Analysis☆123Jul 15, 2026Updated 3 weeks ago
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- NicheNet: predict active ligand-target links between interacting cells☆670Jun 1, 2026Updated 2 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆214Jan 9, 2023Updated 3 years ago