Alternatives and similar repositories for celda

Users that are interested in celda are comparing it to the libraries listed below

• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆139Updated 2 years ago
• cole-trapnell-lab / garnett
  Automated cell type classification
  ☆114Updated 10 months ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆92Updated 5 years ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆107Updated 2 years ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆215Updated last year
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 11 months ago
• cellgeni / batchbench
  ☆46Updated 3 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• 10XGenomics / single-cell-3prime-paper
  ☆85Updated 5 years ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆142Updated last year
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆183Updated 4 years ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 7 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆130Updated last year
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆125Updated last week
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆232Updated last week
• pinellolab / STREAM
  STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
  ☆177Updated 3 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆79Updated 9 months ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆209Updated 2 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆91Updated last week
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆114Updated last year
• hemberg-lab / SC3
  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
  ☆128Updated 4 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated last month
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆96Updated 6 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆211Updated 2 weeks ago
• rajewsky-lab / novosparc
  ☆131Updated 2 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆173Updated last year
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆114Updated 3 months ago