campbio / celdaLinks
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
☆148Updated 5 months ago
Alternatives and similar repositories for celda
Users that are interested in celda are comparing it to the libraries listed below
Sorting:
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- R package to access DoRothEA's regulons☆149Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆194Updated 2 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Multiome GRN inference.☆124Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 7 months ago
- Automated cell type classification☆111Updated 6 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- A Bayesian model for compositional single-cell data analysis☆169Updated 2 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- ☆47Updated 3 years ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 7 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆202Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆122Updated last year
- ☆130Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Metacell - Single-cell mRNA Analysis☆115Updated 5 months ago
- Simple simulation of single-cell RNA sequencing data☆228Updated this week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆103Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 3 months ago
- Interactively analyze single cell genomic data☆182Updated last week
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago
- Fast Wilcoxon and auROC☆186Updated 8 months ago