Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
☆151Feb 13, 2025Updated last year
Alternatives and similar repositories for celda
Users that are interested in celda are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 6 years ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Simple simulation of single-cell RNA sequencing data☆234Jan 12, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 5 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated 2 weeks ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Sep 30, 2025Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆144Apr 5, 2024Updated last year
- R toolkit for the analysis of single-cell chromatin data☆406Jan 20, 2026Updated last month
- A toolkit for single-cell immune profiling☆363Updated this week
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆380Jul 30, 2025Updated 7 months ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆338Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆765Jan 6, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆94Feb 23, 2026Updated last week
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆199Feb 23, 2026Updated last week
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago