CGATOxford / UMI-toolsLinks
Tools for handling Unique Molecular Identifiers in NGS data sets
☆514Updated last week
Alternatives and similar repositories for UMI-tools
Users that are interested in UMI-tools are comparing it to the libraries listed below
Sorting:
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆281Updated 11 months ago
- ENCODE ATAC-seq pipeline☆422Updated 11 months ago
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- Application for making ENCODE Blacklists☆313Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆722Updated last month
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆510Updated 3 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆215Updated 3 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆424Updated 2 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆468Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆205Updated 3 weeks ago
- ENCODE ChIP-seq pipeline☆267Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 3 weeks ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆409Updated last year
- ☆443Updated 5 years ago
- ☆392Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆819Updated 11 months ago
- 10x Genomics Single Cell Analysis☆414Updated 4 months ago
- GTEx & TOPMed data production and analysis pipelines☆371Updated 3 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆746Updated 2 months ago
- Differential analysis of RNA-Seq☆304Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆242Updated 2 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆326Updated this week
- ☆263Updated 7 months ago
- Documentation for the ANNOVAR software☆243Updated 3 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆387Updated 6 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆451Updated last week