CGATOxford / UMI-toolsLinks
Tools for handling Unique Molecular Identifiers in NGS data sets
☆517Updated last month
Alternatives and similar repositories for UMI-tools
Users that are interested in UMI-tools are comparing it to the libraries listed below
Sorting:
- ENCODE ATAC-seq pipeline☆427Updated last year
- Tools to process and analyze deep sequencing data.☆734Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆431Updated 2 weeks ago
- Intro to ChIPseq using HPC☆310Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆377Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆418Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆474Updated 3 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆448Updated last year
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- ☆396Updated 3 years ago
- ☆443Updated 5 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆835Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆395Updated 3 weeks ago
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- 10x Genomics Single Cell Analysis☆426Updated 6 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆283Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆468Updated this week
- parallel fastq-dump wrapper☆299Updated 2 years ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆374Updated last month
- Differential expression of RNA-seq data using the Negative Binomial☆407Updated last week
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆456Updated 9 months ago
- ENCODE ChIP-seq pipeline☆271Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆218Updated last month
- Near-optimal RNA-Seq quantification☆696Updated 4 months ago
- STAR-Fusion codebase☆244Updated last week
- Performant Pythonic GenomicRanges☆483Updated 5 months ago