CGATOxford / UMI-toolsLinks
Tools for handling Unique Molecular Identifiers in NGS data sets
☆522Updated 2 months ago
Alternatives and similar repositories for UMI-tools
Users that are interested in UMI-tools are comparing it to the libraries listed below
Sorting:
- Intro to ChIPseq using HPC☆313Updated 2 years ago
- ENCODE ATAC-seq pipeline☆433Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆432Updated 2 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆454Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- Tools to process and analyze deep sequencing data.☆735Updated 2 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆479Updated 4 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆423Updated last year
- GTEx & TOPMed data production and analysis pipelines☆383Updated 3 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- RNA-seq workflow using STAR and DESeq2☆346Updated 3 weeks ago
- ENCODE ChIP-seq pipeline☆272Updated last year
- Application for making ENCODE Blacklists☆321Updated 4 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- ☆441Updated 5 years ago
- 10x Genomics Single Cell Analysis☆432Updated 7 months ago
- ☆400Updated 3 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆843Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆399Updated 2 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆756Updated 2 months ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆416Updated last month
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆376Updated 2 weeks ago
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 3 months ago
- Near-optimal RNA-Seq quantification☆701Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆552Updated last year
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆485Updated this week
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆461Updated last month
- Differential analysis of RNA-Seq☆306Updated 4 months ago