Alternatives and similar repositories for scg_lib_structs

Users that are interested in scg_lib_structs are comparing it to the libraries listed below

• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆320Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆445Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆443Updated last month
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆332Updated 4 years ago
• hbctraining / DGE_workshop
  ☆408Updated 4 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆322Updated 2 years ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆445Updated 11 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆290Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆394Updated 4 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆278Updated last year
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆338Updated 2 weeks ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆630Updated last week
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆337Updated last week
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆486Updated last month
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆161Updated 3 years ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆523Updated 10 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated last month
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated 2 weeks ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆650Updated 2 months ago
• hbctraining / Intro-to-DGE
  ☆211Updated 5 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆593Updated last year
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆454Updated last year
• Teichlab / cellphonedb
  ☆358Updated 4 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆237Updated 2 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆375Updated 6 months ago
• hbctraining / Intro-to-scRNAseq
  ☆645Updated 3 weeks ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆614Updated 2 months ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆429Updated last year
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆442Updated 2 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆320Updated 5 years ago