Alternatives and similar repositories for scg_lib_structs

Users that are interested in scg_lib_structs are comparing it to the libraries listed below

• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆317Updated 2 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆436Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆437Updated 9 months ago
• hbctraining / DGE_workshop
  ☆402Updated 3 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆329Updated 4 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆321Updated 2 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆286Updated last year
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆438Updated 9 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆275Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆390Updated 2 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆531Updated 4 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆348Updated this week
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆333Updated 3 weeks ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆626Updated last month
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆332Updated this week
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆511Updated 8 months ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆647Updated 3 weeks ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated last week
• hbctraining / Intro-to-DGE
  ☆211Updated 3 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆234Updated this week
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆477Updated 3 weeks ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆158Updated 3 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆448Updated last year
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆428Updated last year
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆366Updated 4 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆218Updated 2 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆591Updated last year
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆424Updated last week
• Teichlab / cellphonedb
  ☆359Updated 3 years ago