Teichlab / scg_lib_structsLinks
Collections of library structure and sequence of popular single cell genomic methods
☆488Updated 7 months ago
Alternatives and similar repositories for scg_lib_structs
Users that are interested in scg_lib_structs are comparing it to the libraries listed below
Sorting:
- 10x Genomics Single Cell Analysis☆440Updated last month
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- ENCODE ATAC-seq pipeline☆443Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆287Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- ☆407Updated 4 years ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- A collection of tools for Hi-C data analysis☆628Updated 2 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆442Updated 10 months ago
- GTEx & TOPMed data production and analysis pipelines☆392Updated 4 months ago
- ENCODE ChIP-seq pipeline☆278Updated last year
- RNA-seq workflow using STAR and DESeq2☆351Updated 3 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆336Updated this week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆534Updated 6 months ago
- TCR and BCR assembly from RNA-seq data☆338Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆517Updated 9 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆380Updated this week
- RNA Velocity generalized through dynamical modeling☆482Updated 3 weeks ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆429Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆648Updated 2 months ago
- Analysis of single cell RNA-seq data course☆161Updated 3 years ago
- ☆442Updated 5 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated this week
- ☆358Updated 4 years ago
- A tool to find sequencing data and metadata from public databases.☆592Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- ☆212Updated 5 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆299Updated 2 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆513Updated last week