Collections of library structure and sequence of popular single cell genomic methods
☆503Apr 16, 2026Updated 3 months ago
Alternatives and similar repositories for scg_lib_structs
Users that are interested in scg_lib_structs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,810Jul 14, 2026Updated last week
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- machine-readable file format for genomic library sequence and structure☆130Jul 15, 2026Updated last week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆297Jul 12, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆443Apr 28, 2026Updated 2 months ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆406Jun 16, 2026Updated last month
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆504Jul 1, 2026Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool for semi-automatic cell type classification☆496May 22, 2026Updated last month
- A tool to find sequencing data and metadata from public databases.☆601Aug 13, 2024Updated last year
- An interactive explorer for single-cell transcriptomics data☆782Updated this week
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- scRNAseq analysis notes from Ming Tang☆822Dec 2, 2024Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆341Updated this week
- RNA-seq aligner☆2,224Mar 18, 2025Updated last year
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,579Dec 11, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- https://www.sc-best-practices.org☆1,227Updated this week
- Scaling Single Cell Analysis to Millions of Cells☆295Jul 13, 2026Updated last week
- Tools for single-cell data processing☆137May 27, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- muon is a multimodal omics Python framework☆273Updated this week
- Convert between AnnData and SingleCellExperiment☆152Updated this week
- Single-Cell Genotyping Tool☆219Oct 2, 2023Updated 2 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,522Updated this week
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNA Velocity generalized through dynamical modeling☆507Feb 25, 2026Updated 4 months ago
- 10x Genomics Single Cell Analysis☆470Dec 10, 2025Updated 7 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆457Apr 11, 2026Updated 3 months ago
- Examples of single-cell genomic analysis accelerated with RAPIDS☆344Aug 27, 2025Updated 10 months ago