COMBINE-lab / salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
☆796Updated 9 months ago
Alternatives and similar repositories for salmon:
Users that are interested in salmon are comparing it to the libraries listed below
- Near-optimal RNA-Seq quantification☆673Updated 3 months ago
- A quality control analysis tool for high throughput sequencing data☆489Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆491Updated last week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆414Updated 2 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆431Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆727Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆496Updated 4 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆432Updated last week
- Transcript assembly and quantification for RNA-Seq☆421Updated last week
- Phylogenetic orthology inference for comparative genomics☆745Updated 5 months ago
- Tools to process and analyze deep sequencing data.☆705Updated this week
- The second version of the Kraken taxonomic sequence classification system☆765Updated last week
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- A single molecule sequence assembler for genomes large and small.☆675Updated last month
- Bioinformatics one liners from Ming Tang☆481Updated 4 years ago
- Fast genome-wide functional annotation through orthology assignment☆597Updated 10 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆394Updated this week
- Java utilities for Bioinformatics☆496Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆607Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆380Updated 2 weeks ago
- A fast and sensitive gapped read aligner☆697Updated 3 months ago
- ChIP-seq analysis notes from Ming Tang☆781Updated 7 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆994Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆808Updated last week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆505Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,275Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆810Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- ☆386Updated 3 years ago