mohuangx / SAVERLinks
Single-cell RNA-seq Gene Expression Recovery
☆111Updated 11 months ago
Alternatives and similar repositories for SAVER
Users that are interested in SAVER are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Geometry-preserving random sampling☆93Updated last year
- Single-Cell Clustering Assessment Framework☆106Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Metacell - Single-cell mRNA Analysis☆117Updated 9 months ago
- ☆57Updated 7 years ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- ☆58Updated 4 years ago
- ☆131Updated 2 years ago
- ☆63Updated 5 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 2 weeks ago
- ☆46Updated 3 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆115Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆85Updated 5 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Multi-omic velocity inference☆112Updated last year
- Code for the MNN manuscript figures☆49Updated 7 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago