mohuangx / SAVER
Single-cell RNA-seq Gene Expression Recovery
☆110Updated 4 months ago
Alternatives and similar repositories for SAVER:
Users that are interested in SAVER are comparing it to the libraries listed below
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Publication Page for MPAL Paper 2019☆82Updated 4 years ago
- ☆46Updated 2 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- ☆85Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- ☆58Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- ☆59Updated 5 years ago
- ☆127Updated last year
- ☆55Updated 6 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Tools for single-cell data processing☆123Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Mouse cell atlas☆60Updated 4 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆108Updated 5 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- ☆60Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Geometry-preserving random sampling☆80Updated 5 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆138Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago