Hoohm / dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
☆147Updated 2 years ago
Alternatives and similar repositories for dropSeqPipe:
Users that are interested in dropSeqPipe are comparing it to the libraries listed below
- R package for analyzing single-cell RNA-seq data☆173Updated last year
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 8 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 3 months ago
- ☆118Updated 6 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- ☆116Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- ☆129Updated 6 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- Interactively analyze single cell genomic data☆182Updated last month
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- Java tools for analyzing Drop-seq data☆125Updated last month
- ☆140Updated 6 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- ☆71Updated 3 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- Cell types enrichment analysis☆194Updated 9 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- R package for DNA methylation analysis☆222Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated last month
- Application for making ENCODE Blacklists☆295Updated 3 years ago