Hoohm / dropSeqPipeLinks
A SingleCell RNASeq pre-processing snakemake workflow
☆149Updated 2 years ago
Alternatives and similar repositories for dropSeqPipe
Users that are interested in dropSeqPipe are comparing it to the libraries listed below
Sorting:
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆221Updated last year
- R package for analyzing single-cell RNA-seq data☆175Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- Java tools for analyzing Drop-seq data☆128Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆182Updated 4 years ago
- ☆118Updated 6 years ago
- ☆117Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆169Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 7 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆281Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- Ultrafast GPU-enabled QTL mapper☆184Updated 2 weeks ago
- R package for DNA methylation analysis☆232Updated 4 months ago
- ☆141Updated 7 years ago
- Single-Cell Genotyping Tool☆209Updated last year
- Cell types enrichment analysis☆198Updated last year
- Interactively analyze single cell genomic data☆182Updated 2 weeks ago
- ☆138Updated 6 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 2 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago