A SingleCell RNASeq pre-processing snakemake workflow
☆149Jan 11, 2023Updated 3 years ago
Alternatives and similar repositories for dropSeqPipe
Users that are interested in dropSeqPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Java tools for analyzing Drop-seq data☆136Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆297Jul 12, 2024Updated 2 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 4 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆76Updated this week
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Table of software for the analysis of single-cell RNA-seq data.☆344Updated this week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆107Nov 22, 2022Updated 3 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆138Jul 1, 2024Updated 2 years ago
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 11 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,860Sep 7, 2026Updated 2 weeks ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Oct 12, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- Tools for working with BUS files☆102May 27, 2025Updated last year
- Single-cell analysis in Python. Scales to >100M cells.☆2,565Updated this week
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Near-optimal RNA-Seq quantification☆772Jul 12, 2026Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Mar 7, 2018Updated 8 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Analysis of single cell RNA-seq data course☆684Apr 11, 2022Updated 4 years ago
- genes and genomes at your fingertips☆411Jun 9, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 9 years ago
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 7 months ago
- Statistical Analysis of RNA-Seq Tools☆111Sep 4, 2026Updated 2 weeks ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago