Hoohm / dropSeqPipeLinks
A SingleCell RNASeq pre-processing snakemake workflow
☆148Updated 3 years ago
Alternatives and similar repositories for dropSeqPipe
Users that are interested in dropSeqPipe are comparing it to the libraries listed below
Sorting:
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- Java tools for analyzing Drop-seq data☆131Updated 3 weeks ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- ☆143Updated 7 years ago
- ☆118Updated 7 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 3 years ago
- ☆120Updated 2 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 9 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆195Updated 2 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆201Updated 5 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆127Updated 2 weeks ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆287Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- deconstructSigs☆144Updated 2 years ago
- ☆145Updated 7 years ago
- Cell types enrichment analysis☆206Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 3 months ago
- R data package for annotating/converting Gene IDs☆168Updated 6 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year