Alternatives and similar repositories for scRNAseq_pipelines:

Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below

• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 11 months ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆15Updated 5 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated last month
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• czhu / FulQuant
  FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data
  ☆9Updated 2 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated last year
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆14Updated 3 years ago
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆11Updated last year
• jw156605 / SingleSplice
  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…
  ☆21Updated 8 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• a2iEditing / deNovo-Detect
  ☆11Updated 2 years ago
• caravagnalab / mobster
  Model-based subclonal deconvolution from bulk sequencing.
  ☆33Updated 3 months ago
• nghiavtr / FuSeq_WES
  ☆11Updated last year
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• farkkilab / scarHRD
  Package for calculation of Homologous Recombination Deficiency
  ☆13Updated 4 years ago
• songlab-cal / scquint
  ☆16Updated 10 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆20Updated last year