☆12Oct 31, 2020Updated 5 years ago
Alternatives and similar repositories for scRNAseq_pipelines
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 6 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆11May 3, 2022Updated 3 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆293Jul 12, 2024Updated last year
- ☆19Mar 6, 2019Updated 7 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 4 months ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jan 10, 2026Updated 3 months ago
- ☆10Feb 6, 2021Updated 5 years ago
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆15Sep 19, 2025Updated 6 months ago
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- bioinformatic pipeline for GLORI☆22Mar 30, 2026Updated 2 weeks ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated 10 months ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆27Oct 17, 2018Updated 7 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 6 months ago
- ☆33Jul 17, 2021Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 2 months ago
- chatGpt Api 接口服务☆38Jun 17, 2023Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago