xmuyulab / scRNAseq_pipelines
☆12Updated 4 years ago
Alternatives and similar repositories for scRNAseq_pipelines:
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- ☆17Updated 11 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ChromSCape☆14Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆11Updated this week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆12Updated 9 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- omics data analysis using clusterProfiler ;)☆13Updated 11 months ago
- A collection of perl scripts for NGS analysis☆16Updated 7 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆9Updated 4 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆17Updated 2 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆9Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- ☆20Updated last year
- ☆11Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago