scRNA-tools / scRNA-toolsLinks
Table of software for the analysis of single-cell RNA-seq data.
☆337Updated this week
Alternatives and similar repositories for scRNA-tools
Users that are interested in scRNA-tools are comparing it to the libraries listed below
Sorting:
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆320Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆444Updated 11 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆309Updated 3 months ago
- Community-provided extensions to Seurat☆355Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆425Updated last month
- A toolkit for single-cell immune profiling☆362Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆300Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆290Updated last year
- ☆292Updated 3 years ago
- 10x Genomics Single Cell Analysis☆441Updated last month
- Single cell RNA sequencing analysis course☆236Updated 3 weeks ago
- ☆286Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆311Updated 3 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆520Updated 3 weeks ago
- ☆358Updated 4 years ago
- ☆435Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆403Updated last week
- Single RNA-seq data analysis with R (Finland, May, 2019)☆229Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆247Updated 3 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆650Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆260Updated 3 months ago
- Intro to ChIPseq using HPC☆321Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆462Updated 3 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆521Updated 10 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆490Updated 8 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆337Updated 2 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆196Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Updated last year
- T/B cell receptor sequencing analysis notes☆271Updated last year