scRNA-tools / scRNA-toolsLinks
Table of software for the analysis of single-cell RNA-seq data.
☆335Updated last week
Alternatives and similar repositories for scRNA-tools
Users that are interested in scRNA-tools are comparing it to the libraries listed below
Sorting:
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆306Updated 2 months ago
- A toolkit for single-cell immune profiling☆357Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆422Updated 3 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆316Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆299Updated 2 years ago
- Community-provided extensions to Seurat☆353Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆287Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆442Updated 10 months ago
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- Single cell RNA sequencing analysis course☆231Updated this week
- T/B cell receptor sequencing analysis notes☆271Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆229Updated 3 years ago
- ☆282Updated last year
- R toolkit for the analysis of single-cell chromatin data☆398Updated last month
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆513Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆307Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆245Updated 2 weeks ago
- Collections of library structure and sequence of popular single cell genomic methods☆488Updated 7 months ago
- ☆291Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆517Updated 9 months ago
- my notes for scATACseq analysis☆133Updated last year
- 10x Genomics Single Cell Analysis☆440Updated last month
- Analysis of single cell RNA-seq data course☆161Updated 3 years ago
- ☆259Updated 2 months ago
- ☆358Updated 4 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆335Updated last month
- Tools and methods for analysis of single cell assay data in R☆257Updated 2 months ago
- Inferring CNV from Single-Cell RNA-Seq☆646Updated last month
- A package to help convert different single-cell data formats to each other☆451Updated last year