scRNA-tools / scRNA-toolsLinks
Table of software for the analysis of single-cell RNA-seq data.
☆324Updated this week
Alternatives and similar repositories for scRNA-tools
Users that are interested in scRNA-tools are comparing it to the libraries listed below
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆297Updated 4 years ago
- Intro to ChIPseq using HPC☆306Updated 2 years ago
- A toolkit for single-cell immune profiling☆333Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆614Updated 4 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆465Updated 2 weeks ago
- ☆265Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆421Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆413Updated 3 weeks ago
- ENCODE ChIP-seq pipeline☆267Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆286Updated 2 weeks ago
- ☆235Updated 11 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆468Updated 2 months ago
- ☆197Updated 2 months ago
- Single cell RNA sequencing analysis course☆214Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆283Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆425Updated last year
- Community-provided extensions to Seurat☆333Updated 6 months ago
- NicheNet: predict active ligand-target links between interacting cells☆540Updated this week
- ENCODE ATAC-seq pipeline☆418Updated 10 months ago
- my notes for scATACseq analysis☆126Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last week
- Application for making ENCODE Blacklists☆308Updated 4 years ago
- tools and notes for spatial omics☆296Updated 3 months ago
- ☆355Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- T/B cell receptor sequencing analysis notes☆254Updated 6 months ago
- Analysis of single cell RNA-seq data course☆136Updated 2 years ago