scRNA-tools / scRNA-toolsLinks
Table of software for the analysis of single-cell RNA-seq data.
☆331Updated this week
Alternatives and similar repositories for scRNA-tools
Users that are interested in scRNA-tools are comparing it to the libraries listed below
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆297Updated 2 months ago
- A toolkit for single-cell immune profiling☆349Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 7 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆292Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆421Updated last month
- ☆289Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆295Updated 2 years ago
- 10x Genomics Single Cell Analysis☆432Updated 7 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 3 years ago
- Community-provided extensions to Seurat☆348Updated 10 months ago
- Intro to ChIPseq using HPC☆313Updated 2 years ago
- Single cell RNA sequencing analysis course☆223Updated 2 weeks ago
- ☆274Updated 10 months ago
- ☆359Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- ☆206Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆574Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆236Updated 5 months ago
- Tools and methods for analysis of single cell assay data in R☆252Updated 2 years ago
- T/B cell receptor sequencing analysis notes☆265Updated 10 months ago
- ☆253Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated 3 weeks ago
- GTEx & TOPMed data production and analysis pipelines☆383Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆394Updated last month
- Analysis of single cell RNA-seq data course☆149Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆497Updated 6 months ago
- Tutorial for scRNA-seq data analysis beginners using R☆221Updated 7 months ago