sandberg-lab / Smart-seq3
Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
☆52Updated 3 years ago
Alternatives and similar repositories for Smart-seq3:
Users that are interested in Smart-seq3 are comparing it to the libraries listed below
- SNV calling from single cell sequencing☆97Updated 5 months ago
- Tutorial Website☆59Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆28Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- Single Cell Analysis of Five'Ends☆49Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- A list of alternative splicing analysis resources☆43Updated last month
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated last month
- ☆62Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- Pipeline for Cut&Tag analysis☆21Updated 2 weeks ago
- Analysis of Paired-Tag datasets☆41Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- release version☆51Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆57Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated last week