SUPPA: Fast quantification of splicing and differential splicing
☆308Nov 6, 2025Updated 10 months ago
Alternatives and similar repositories for SUPPA
Users that are interested in SUPPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆310Aug 10, 2026Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆281Updated this week
- ☆163Jun 29, 2026Updated 2 months ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆259Sep 2, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆136Updated this week
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- ☆68Mar 19, 2026Updated 6 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆94Mar 23, 2026Updated 5 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆141Aug 21, 2024Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- A universal toolkit for upstream processing of long RNA reads☆239Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transcript assembly and quantification for RNA-Seq☆534Aug 9, 2026Updated last month
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- ☆38Aug 6, 2026Updated last month
- ☆17Jul 19, 2024Updated 2 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆932Updated this week
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆289Jul 7, 2026Updated 2 months ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆236Jun 1, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Full-Length Alternative Isoform analysis of RNA☆257Sep 8, 2026Updated 2 weeks ago
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 8 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆283Sep 26, 2023Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆95Apr 30, 2021Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆115Apr 13, 2026Updated 5 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37May 30, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆500Jul 7, 2026Updated 2 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- reference-free transcriptome assembly for short and long reads☆112Mar 13, 2026Updated 6 months ago
- Near-optimal RNA-Seq quantification☆772Jul 12, 2026Updated 2 months ago
- TransDecoder source☆311Mar 22, 2026Updated 6 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆589Sep 7, 2026Updated 2 weeks ago