SUPPA: Fast quantification of splicing and differential splicing
☆298Nov 6, 2025Updated 5 months ago
Alternatives and similar repositories for SUPPA
Users that are interested in SUPPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆295Mar 4, 2026Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Apr 24, 2026Updated last week
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- ☆160Mar 16, 2026Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆238Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PSI-Sigma☆40Nov 10, 2023Updated 2 years ago
- ☆64Mar 19, 2026Updated last month
- Command-line tool for the visualization of splicing events across multiple samples☆140Jun 28, 2024Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆128Apr 10, 2026Updated 3 weeks ago
- Technology agnostic long read analysis pipeline for transcriptomes☆158Jan 25, 2024Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆137Aug 21, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated last month
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆220Updated this week
- Transcript assembly and quantification for RNA-Seq☆508Dec 26, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- ☆17Jul 19, 2024Updated last year
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆877Mar 11, 2026Updated last month
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Mar 21, 2026Updated last month
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆270Mar 15, 2026Updated last month
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆233Jun 1, 2024Updated last year
- Full-Length Alternative Isoform analysis of RNA☆251Apr 21, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated 11 months ago
- A Python library to visualize and analyze long-read transcriptomes☆68Jan 19, 2026Updated 3 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆93Apr 30, 2021Updated 5 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- ☆35Mar 17, 2026Updated last month
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆112Apr 13, 2026Updated 2 weeks ago
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Mar 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆476Apr 10, 2026Updated 2 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Updated this week
- Long-read Isoform Quantification and Analysis☆39Mar 25, 2025Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- Near-optimal RNA-Seq quantification☆758Mar 16, 2026Updated last month
- SingleCell Nanopore sequencing data analysis☆65May 30, 2025Updated 11 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆18Apr 20, 2026Updated last week