mfcovington / auto_barcode
Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
☆13Updated 8 years ago
Related projects: ⓘ
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆17Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 4 years ago
- End-guided RNA assembler☆15Updated 11 months ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year
- FunctionaL Omics Processing platform☆13Updated last month
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- Two pass alignment for long reads☆20Updated 3 years ago
- iread☆23Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated 10 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆12Updated 7 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 5 years ago
- Bioinformatics Pipeline☆12Updated last year
- RNA-seq data comprehensive data analysis toolbox☆18Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- ☆21Updated 3 weeks ago
- ☆13Updated 6 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆23Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- ☆25Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- interactive plots for differential expression analysis☆25Updated 2 weeks ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- ☆17Updated 2 months ago