chanzuckerberg / cellxgeneLinks
An interactive explorer for single-cell transcriptomics data
☆688Updated this week
Alternatives and similar repositories for cellxgene
Users that are interested in cellxgene are comparing it to the libraries listed below
Sorting:
- RNA Velocity generalized through dynamical modeling☆447Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆504Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆467Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆325Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆541Updated last week
- scripts and notebooks from sanbomics☆409Updated 6 months ago
- https://www.sc-best-practices.org☆918Updated last week
- ☆355Updated 3 years ago
- 10x Genomics Single Cell Analysis☆412Updated 3 months ago
- This is the alpha version of the CellOracle package☆356Updated 5 months ago
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- A list of scRNA-seq analysis tools☆702Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆473Updated 2 months ago
- scRNAseq analysis notes from Ming Tang☆706Updated 6 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,380Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆490Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆576Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆331Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆425Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆616Updated 4 months ago
- ☆565Updated 4 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆396Updated this week
- ☆595Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆341Updated 3 months ago
- List of software packages for multi-omics analysis☆801Updated last month
- Gene Set Enrichment Analysis in Python☆632Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆455Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆368Updated 3 weeks ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆425Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆420Updated 10 months ago