seandavi / awesome-single-cellLinks
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
☆3,465Updated this week
Alternatives and similar repositories for awesome-single-cell
Users that are interested in awesome-single-cell are comparing it to the libraries listed below
Sorting:
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,505Updated 2 years ago
- R toolkit for single cell genomics☆2,500Updated last week
- RNAseq analysis notes from Ming Tang☆1,030Updated 3 years ago
- https://www.sc-best-practices.org☆1,000Updated last month
- Unix, R and python tools for genomics and data science☆1,312Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,427Updated last week
- A list of scRNA-seq analysis tools☆727Updated 2 weeks ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,382Updated 2 years ago
- Analysis of single cell RNA-seq data course☆675Updated 3 years ago
- ☆618Updated 4 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,171Updated this week
- List of software packages for multi-omics analysis☆828Updated 4 months ago
- ChIP-seq analysis notes from Ming Tang☆815Updated last year
- scRNAseq analysis notes from Ming Tang☆733Updated 8 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,089Updated last week
- ☆575Updated 4 years ago
- resources for learning bioinformatics☆1,192Updated 7 months ago
- Collection of bioinformatics training materials☆1,052Updated last week
- A universal enrichment tool for interpreting omics data☆1,114Updated 4 months ago
- A curated list of resources for learning bioinformatics.☆488Updated 3 years ago
- Supplementary files for my book, "Bioinformatics Data Skills"☆681Updated 6 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆725Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆633Updated 6 months ago
- RNA-seq aligner☆2,016Updated 5 months ago
- A list of useful bioinformatics resources☆614Updated 4 months ago
- Applied Computational Genomics Course at UU: Spring 2020☆1,038Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆713Updated this week
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆498Updated last year
- Interactive lessons in bioinformatics.☆853Updated 4 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆596Updated 9 months ago