seandavi / awesome-single-cellLinks
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
☆3,498Updated 3 weeks ago
Alternatives and similar repositories for awesome-single-cell
Users that are interested in awesome-single-cell are comparing it to the libraries listed below
Sorting:
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,507Updated 2 years ago
- R toolkit for single cell genomics☆2,511Updated last week
- https://www.sc-best-practices.org☆1,004Updated 2 months ago
- RNAseq analysis notes from Ming Tang☆1,036Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,182Updated last week
- Unix, R and python tools for genomics and data science☆1,316Updated 3 weeks ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,384Updated 2 years ago
- A list of scRNA-seq analysis tools☆733Updated last week
- Analysis of single cell RNA-seq data course☆675Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,438Updated this week
- ChIP-seq analysis notes from Ming Tang☆818Updated last year
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,101Updated this week
- List of software packages for multi-omics analysis☆829Updated 4 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,171Updated this week
- ☆621Updated 5 months ago
- ☆580Updated 4 years ago
- scRNAseq analysis notes from Ming Tang☆736Updated 9 months ago
- resources for learning bioinformatics☆1,233Updated 8 months ago
- A comprehensive tutorial about GWAS and PRS☆926Updated 2 years ago
- A universal enrichment tool for interpreting omics data☆1,121Updated 5 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆728Updated last year
- RNA-seq aligner☆2,022Updated 5 months ago
- Collection of bioinformatics training materials☆1,058Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆635Updated 7 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,353Updated last week
- Applied Computational Genomics Course at UU: Spring 2020☆1,046Updated last year
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆733Updated this week
- MACS -- Model-based Analysis of ChIP-Seq☆754Updated last month
- A list of useful bioinformatics resources☆616Updated 4 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆428Updated last month