Alternatives and similar repositories for awesome-single-cell:

Users that are interested in awesome-single-cell are comparing it to the libraries listed below

• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,461Updated 2 years ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆991Updated 3 years ago
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆682Updated 3 weeks ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆768Updated 11 months ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆672Updated 2 years ago
• satijalab / seurat
  R toolkit for single cell genomics
  ☆2,403Updated this week
• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,257Updated 2 weeks ago
• hbctraining / scRNA-seq
  ☆555Updated 4 years ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,361Updated last year
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆869Updated this week
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆781Updated 7 months ago
• hbctraining / Intro-to-scRNAseq
  ☆573Updated this week
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,077Updated last month
• scverse / scanpy
  Single-cell analysis in Python. Scales to >100M cells.
  ☆2,052Updated this week
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,005Updated this week
• scverse / scvi-tools
  Deep probabilistic analysis of single-cell and spatial omics data
  ☆1,352Updated this week
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆601Updated last month
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆682Updated 3 months ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆419Updated last week
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆473Updated 3 years ago
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆611Updated this week
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆395Updated 4 months ago
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆559Updated 4 months ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆875Updated last year
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆428Updated 7 years ago
• quinlan-lab / applied-computational-genomics
  Applied Computational Genomics Course at UU: Spring 2020
  ☆964Updated 11 months ago
• pachterlab / BI-BE-CS-183-2023
  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
  ☆475Updated last year
• sqjin / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆679Updated last year
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆725Updated last month
• hbctraining / DGE_workshop
  ☆388Updated 3 years ago