seandavi / awesome-single-cellLinks
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
☆3,530Updated last month
Alternatives and similar repositories for awesome-single-cell
Users that are interested in awesome-single-cell are comparing it to the libraries listed below
Sorting:
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,523Updated 2 years ago
- R toolkit for single cell genomics☆2,540Updated this week
- https://www.sc-best-practices.org☆1,032Updated 3 months ago
- RNAseq analysis notes from Ming Tang☆1,047Updated 3 years ago
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- Unix, R and python tools for genomics and data science☆1,328Updated last month
- A list of scRNA-seq analysis tools☆746Updated 2 weeks ago
- List of software packages for multi-omics analysis☆845Updated 3 weeks ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,390Updated 2 years ago
- ☆629Updated 6 months ago
- ChIP-seq analysis notes from Ming Tang☆828Updated last year
- A universal enrichment tool for interpreting omics data☆1,135Updated 6 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,231Updated last week
- ☆587Updated 4 years ago
- scRNAseq analysis notes from Ming Tang☆759Updated 10 months ago
- A comprehensive tutorial about GWAS and PRS☆941Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,482Updated this week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,114Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆735Updated last year
- resources for learning bioinformatics☆1,259Updated 9 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆752Updated 3 weeks ago
- Collection of bioinformatics training materials☆1,066Updated 2 weeks ago
- A list of useful bioinformatics resources☆617Updated 5 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,372Updated this week
- Applied Computational Genomics Course at UU: Spring 2020☆1,056Updated last year
- ☆851Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆646Updated 8 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,197Updated last week
- A curated list of resources for learning bioinformatics.☆494Updated 3 years ago
- Supplementary files for my book, "Bioinformatics Data Skills"☆695Updated 7 years ago