RNA-seq aligner
☆2,201Mar 18, 2025Updated last year
Alternatives and similar repositories for STAR
Users that are interested in STAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆471Apr 21, 2026Updated last month
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆889Mar 11, 2026Updated 2 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,370Jun 1, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 2 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆538Jan 27, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,068Apr 25, 2026Updated last month
- Near-optimal RNA-Seq quantification☆763Mar 16, 2026Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,038Mar 11, 2025Updated last year
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data☆556Updated this week
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,748Mar 22, 2025Updated last year
- SRA Tools☆1,344Updated this week
- STAR-Fusion codebase☆254Apr 18, 2026Updated last month
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated last month
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,911May 21, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,193May 19, 2026Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Cutadapt removes adapter sequences from sequencing reads☆581Apr 6, 2026Updated 2 months ago
- Transcript assembly and quantification for RNA-Seq☆513Updated this week
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,744Jun 1, 2026Updated last week
- A fast and sensitive gapped read aligner☆793Jun 1, 2026Updated last week
- Trinity RNA-Seq de novo transcriptome assembly☆895Apr 23, 2026Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,541Jun 1, 2025Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆547Jun 1, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R toolkit for single cell genomics☆2,746May 29, 2026Updated last week
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- A universal enrichment tool for interpreting omics data☆1,210May 31, 2026Updated last week
- ☆321Mar 31, 2020Updated 6 years ago
- The next version of bwa-mem☆837Oct 15, 2025Updated 7 months ago
- BEDOPS: high-performance genomic feature operations☆369Apr 29, 2025Updated last year
- Official code repository for GATK versions 4 and up☆1,962Updated this week
- 10x Genomics Single Cell Analysis☆468Dec 10, 2025Updated 5 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,482Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆484Apr 10, 2026Updated last month
- C++ API & command-line toolkit for working with BAM data☆430May 18, 2025Updated last year
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,425May 31, 2023Updated 3 years ago
- A quality control analysis tool for high throughput sequencing data☆601May 29, 2026Updated last week
- ☆303Mar 4, 2026Updated 3 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆295Jul 12, 2024Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Updated this week