RNA-seq aligner
β2,276Mar 18, 2025Updated last year
Alternatives and similar repositories for STAR
Users that are interested in STAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq dataβ479Aug 7, 2026Updated 2 months ago
- π π£ π± Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignmentβ942Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)β2,452Oct 7, 2026Updated 3 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.β1,497Updated this week
- Near-optimal RNA-Seq quantificationβ775Jul 12, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.β1,081Jul 31, 2026Updated 2 months ago
- Graph-based alignment (Hierarchical Graph FM index)β546Jul 31, 2026Updated 2 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)β1,769Aug 7, 2026Updated 2 months ago
- SRA Toolsβ1,372Updated this week
- MACS -- Model-based Analysis of ChIP-Seqβ789Updated this week
- Tools (written in C using htslib) for manipulating next-generation sequencing dataβ1,971Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequencesβ2,261May 19, 2026Updated 5 months ago
- bedtools - the swiss army knife for genome arithmeticβ1,055Jun 10, 2026Updated 4 months ago
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS dataβ580Updated this week
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools to process and analyze deep sequencing data.β772Updated this week
- Toolkit for processing sequences in FASTA/Q formatsβ1,565Jun 1, 2025Updated last year
- STAR-Fusion codebaseβ255Oct 14, 2026Updated 2 weeks ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.β3,885Updated this week
- Transcript assembly and quantification for RNA-Seqβ534Aug 9, 2026Updated 2 months ago
- A fast and sensitive gapped read alignerβ811Updated this week
- Cutadapt removes adapter sequences from sequencing readsβ590Sep 21, 2026Updated last month
- Tools for working with SAM/BAM dataβ613Dec 22, 2024Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data setsβ549Oct 4, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Trinity RNA-Seq de novo transcriptome assemblyβ902Apr 23, 2026Updated 6 months ago
- R toolkit for single cell genomicsβ2,811Updated this week
- C++ API & command-line toolkit for working with BAM dataβ432May 18, 2025Updated last year
- BEDOPS: high-performance genomic feature operationsβ375Apr 29, 2025Updated last year
- Official code repository for GATK versions 4 and upβ2,009Updated this week
- Single-cell analysis in Python. Scales to >100M cells.β2,599Updated this week
- β325Mar 31, 2020Updated 6 years ago
- 10x Genomics Single Cell Analysisβ479Aug 17, 2026Updated 2 months ago
- A universal enrichment tool for interpreting omics dataβ1,243Updated this week
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis incluβ¦β1,436May 31, 2023Updated 3 years ago
- The next version of bwa-memβ867Oct 15, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and moreβ504Jul 7, 2026Updated 3 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmonyβ676Oct 15, 2026Updated 2 weeks ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.β1,402Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIsβ298Jul 12, 2024Updated 2 years ago
- A quality control analysis tool for high throughput sequencing dataβ626Oct 7, 2026Updated 3 weeks ago