☆122Aug 17, 2018Updated 8 years ago
Alternatives and similar repositories for scRNASeqPipeline
Users that are interested in scRNASeqPipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of single cell RNA-seq data course☆686Apr 11, 2022Updated 4 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆298Jul 12, 2024Updated 2 years ago
- ☆18Aug 14, 2017Updated 9 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,887Updated this week
- ☆55Feb 19, 2025Updated last year
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Jun 28, 2021Updated 5 years ago
- A list of scRNA-seq analysis tools☆826Updated this week
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆223Aug 30, 2023Updated 3 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆150Apr 5, 2024Updated 2 years ago
- Batch effects and the effective design of single-cell gene expression studies☆110Jul 23, 2019Updated 7 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Jul 15, 2021Updated 5 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago
- Scripts to recreate figures from the SC3 paper☆41Mar 1, 2017Updated 9 years ago
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆76Jul 16, 2026Updated 3 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,599Dec 11, 2022Updated 3 years ago
- ☆445Jun 15, 2020Updated 6 years ago
- ☆16Jun 11, 2019Updated 7 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆68Sep 24, 2026Updated last month
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 7 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆109Aug 1, 2023Updated 3 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- Bench-marking classification tools for scRNA-seq data☆195Jun 9, 2022Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆49Sep 18, 2025Updated last year
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 6 months ago