tallulandrews / scRNASeqPipelineLinks
☆118Updated 7 years ago
Alternatives and similar repositories for scRNASeqPipeline
Users that are interested in scRNASeqPipeline are comparing it to the libraries listed below
Sorting:
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- my notes for scATACseq analysis☆132Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- Cell types enrichment analysis☆205Updated last year
- ☆112Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- ☆73Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 9 months ago
- Basic workflow for ATAC-seq analysis☆92Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆199Updated last month
- ☆144Updated 6 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Analysis pipeline for ATAC-seq data☆81Updated 2 years ago
- Java tools for analyzing Drop-seq data☆130Updated last month
- URD - Reconstruction of Branching Developmental Trajectories☆125Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆140Updated last year
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆198Updated 5 years ago
- Clone of the Bioconductor repository for the SingleR package.☆198Updated last month
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- ☆120Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago