tallulandrews / scRNASeqPipelineLinks
☆118Updated 7 years ago
Alternatives and similar repositories for scRNASeqPipeline
Users that are interested in scRNASeqPipeline are comparing it to the libraries listed below
Sorting:
- chromatin Variability Across Regions (of the genome!)☆180Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆96Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- my notes for scATACseq analysis☆131Updated last year
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- ☆109Updated last year
- ☆71Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Cell types enrichment analysis☆198Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆137Updated 6 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- RNA velocity estimation in R☆188Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq☆191Updated last month
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- ☆174Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆193Updated last month
- Java tools for analyzing Drop-seq data☆130Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- ☆163Updated last week
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆63Updated 2 months ago
- Basic workflow for ATAC-seq analysis☆82Updated last year