RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
☆297Dec 17, 2025Updated 3 months ago
Alternatives and similar repositories for RepeatMasker
Users that are interested in RepeatMasker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De-Novo Repeat Discovery Tool☆233Jul 21, 2025Updated 8 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆451Oct 20, 2025Updated 5 months ago
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆465Mar 15, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 8 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆202Jan 16, 2023Updated 3 years ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- Extensive de-novo TE Annotator☆435Mar 12, 2026Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆240Jun 16, 2025Updated 9 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆567Jan 13, 2026Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆241Jan 9, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- haplotypic duplication identification tool☆277Oct 30, 2025Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆495Dec 26, 2025Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆281Sep 30, 2025Updated 5 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,144Feb 13, 2026Updated last month
- source code for EVM☆122Nov 29, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- TransDecoder source☆302Sep 29, 2025Updated 5 months ago
- Mummer alignment tool☆551Feb 4, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆268Mar 15, 2026Updated last week
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- FamDB file format library and utilities☆38Aug 27, 2025Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆166Oct 29, 2025Updated 4 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆235Feb 10, 2026Updated last month
- A program for detection of tRNA genes☆87Nov 16, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆752Mar 18, 2025Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Dfam Transposable Element Tools Docker container.☆104Dec 17, 2025Updated 3 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆373Feb 13, 2025Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆176Apr 14, 2025Updated 11 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 2 months ago
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,026Mar 11, 2025Updated last year