Dfam-consortium / RepeatMaskerLinks
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
☆265Updated 2 weeks ago
Alternatives and similar repositories for RepeatMasker
Users that are interested in RepeatMasker are comparing it to the libraries listed below
Sorting:
- Genome Assembly and Annotation Service code☆213Updated last year
- De-Novo Repeat Discovery Tool☆216Updated 2 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆269Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- TransDecoder source☆292Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆311Updated 3 months ago
- 3D de novo assembly (3D DNA) pipeline☆213Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆259Updated 6 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆352Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- An overview of all nanopack tools☆260Updated 2 years ago
- Any Way to Show Multi genomic Synteny☆197Updated last week
- ☆200Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆189Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated last week
- PASA software☆188Updated 5 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆225Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆270Updated 6 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- Fast genome analysis from unassembled short reads☆292Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- Read trimming tool for Illumina NGS data.☆139Updated 10 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago