Alternatives and similar repositories for RepeatMasker

Users that are interested in RepeatMasker are comparing it to the libraries listed below

• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆217Updated 2 years ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆230Updated 5 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆337Updated 9 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆284Updated 11 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆220Updated 2 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆272Updated 3 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆301Updated 3 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆239Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆274Updated 2 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆216Updated 6 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆327Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆227Updated 6 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆377Updated this week
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆306Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆218Updated last month
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆321Updated 3 months ago
• PASApipeline / PASApipeline
  PASA software
  ☆197Updated 11 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆234Updated 6 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆440Updated 8 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆148Updated 10 years ago
• wdecoster / chopper
  ☆225Updated last month
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆211Updated 2 years ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆195Updated last year
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆422Updated 3 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆215Updated 6 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆397Updated last year
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆282Updated 4 months ago