fmalmeida / bacannotLinks
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
☆105Updated 2 weeks ago
Alternatives and similar repositories for bacannot
Users that are interested in bacannot are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Precise host read removal☆115Updated 5 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated this week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆99Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- ☆84Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- Microbiome classification pipeline☆65Updated 8 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- Interactive quality assessment of genome assemblies☆118Updated this week
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 6 months ago
- ☆81Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- IS mapping software☆57Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 4 months ago
- whole genome MLST analysis☆51Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- Split k-mer analysis – version 2☆104Updated last week