fmalmeida / bacannotLinks
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
☆105Updated last month
Alternatives and similar repositories for bacannot
Users that are interested in bacannot are comparing it to the libraries listed below
Sorting:
- Precise host read removal☆112Updated 4 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆102Updated last week
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 10 months ago
- Microbiome classification pipeline☆65Updated 8 months ago
- Rapid determination of appropriate reference genomes.☆99Updated 11 months ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 8 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- ☆81Updated last month
- Prediction of prophages from bacterial genomes☆80Updated 7 months ago
- Split Kmer Analysis☆67Updated 3 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆116Updated last month
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- IS mapping software☆57Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆78Updated 8 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated this week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago