Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
☆105Jan 22, 2026Updated last month
Alternatives and similar repositories for bacannot
Users that are interested in bacannot are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Jan 22, 2026Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Dec 5, 2025Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated last week
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Nov 20, 2025Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆173Nov 27, 2025Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Jan 19, 2026Updated last month
- A tool for removing redundant genomes from a set of assemblies☆78Sep 10, 2025Updated 5 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Dec 3, 2025Updated 2 months ago
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆91May 3, 2025Updated 9 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆340Sep 11, 2025Updated 5 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122Jan 22, 2025Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆73Nov 11, 2025Updated 3 months ago
- Rapid determination of appropriate reference genomes.☆99Jan 22, 2025Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆128Jan 22, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆500Dec 19, 2025Updated 2 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Jun 25, 2023Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Feb 20, 2026Updated last week
- BSR-Based Allele Calling Algorithm☆148Feb 2, 2026Updated 3 weeks ago
- fast phage annotation program☆197Feb 1, 2026Updated 3 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 3 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆165Feb 11, 2026Updated 2 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆150Oct 2, 2025Updated 4 months ago
- ☆157Jun 18, 2024Updated last year
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Sep 27, 2025Updated 5 months ago
- Build a partitioned pangenome graph from microbial genomes☆294Updated this week
- An updated pipeline for pangenome investigation☆344Jan 15, 2026Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆81Nov 23, 2023Updated 2 years ago
- ☆82Nov 27, 2025Updated 3 months ago