Build a partitioned pangenome graph from microbial genomes
☆304Jun 26, 2026Updated last week
Alternatives and similar repositories for PPanGGOLiN
Users that are interested in PPanGGOLiN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated last month
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- Reorients assembled microbial sequences☆141Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- geNomad: Identification of mobile genetic elements☆318Mar 29, 2026Updated 3 months ago
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- Gene cluster comparison figure generator☆644Dec 22, 2025Updated 6 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last month
- A grammar of graphics for comparative genomics☆770Feb 23, 2026Updated 4 months ago
- Read alignment statistics for metagenomics☆399Jun 26, 2026Updated last week
- Finding regions of similarity between plasmids☆17Updated this week
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆423May 20, 2026Updated last month
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 2 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 3 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆108Jun 2, 2026Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆66Jan 19, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆371Updated this week
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated 3 weeks ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆51Feb 5, 2026Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆155Oct 2, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mass screening of contigs for antimicrobial and virulence genes☆497Apr 3, 2026Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆519May 21, 2026Updated last month
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆127Jun 16, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 5 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago