labgem / PPanGGOLiNLinks
Build a partitioned pangenome graph from microbial genomes
☆290Updated last week
Alternatives and similar repositories for PPanGGOLiN
Users that are interested in PPanGGOLiN are comparing it to the libraries listed below
Sorting:
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆278Updated last year
- Rapid comparison and dereplication of genomes☆324Updated last month
- Bacterial ribosomal RNA predictor☆266Updated this week
- Scan contig files against PubMLST typing schemes☆254Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆279Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated 2 months ago
- quality filtering tool for long reads☆381Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆308Updated last week
- A user-friendly workflow for phylogenomics☆224Updated 2 weeks ago
- A tool to circularize genome assemblies☆249Updated last year
- Pan-genome wide association studies☆205Updated last year
- Rapid large-scale prokaryote pan genome analysis☆364Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆247Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆241Updated 9 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆197Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 4 months ago
- fast phage annotation program☆187Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆399Updated 6 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆220Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆268Updated 2 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 5 months ago
- Assembly and binning of metagenomes☆265Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆435Updated 8 months ago