labgem / PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
☆264Updated this week
Alternatives and similar repositories for PPanGGOLiN:
Users that are interested in PPanGGOLiN are comparing it to the libraries listed below
- An updated pipeline for pangenome investigation☆294Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆244Updated 4 months ago
- Scan contig files against PubMLST typing schemes☆221Updated 2 years ago
- Rapid comparison and dereplication of genomes☆282Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆274Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆497Updated last month
- geNomad: Identification of mobile genetic elements☆226Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆157Updated 2 months ago
- Bacterial ribosomal RNA predictor☆239Updated last year
- Rapid large-scale prokaryote pan genome analysis☆341Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- Pan-genome wide association studies☆193Updated 10 months ago
- Eukaryotic Genome Annotation Pipeline☆345Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆206Updated 4 months ago
- quality filtering tool for long reads☆326Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆367Updated 7 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆187Updated 2 months ago
- fast phage annotation program☆161Updated 2 months ago
- BSR-Based Allele Calling Algorithm☆141Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆300Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆399Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆141Updated 6 months ago
- Synteny and Rearrangement Identifier☆374Updated 2 weeks ago
- A user-friendly workflow for phylogenomics☆210Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆500Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆333Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆305Updated last month
- A tool to circularize genome assemblies☆240Updated last year