gamcil / clinkerLinks
Gene cluster comparison figure generator
☆613Updated 10 months ago
Alternatives and similar repositories for clinker
Users that are interested in clinker are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆553Updated last month
- Fast genome-wide functional annotation through orthology assignment☆658Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆475Updated this week
- A complete pipeline for metagenomic analysis☆431Updated last month
- Phylogenetic orthology inference for comparative genomics☆797Updated 2 months ago
- A genome visualization python package for comparative genomics☆367Updated last month
- hybrid assembly pipeline for bacterial genomes☆618Updated last year
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆355Updated last week
- Eukaryotic Genome Annotation Pipeline☆363Updated 3 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆436Updated 5 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆388Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆426Updated 8 months ago
- Prodigal Gene Prediction Software☆506Updated last year
- Rapid haploid variant calling and core genome alignment☆545Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆399Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆872Updated 5 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆438Updated 9 months ago
- Rapid prokaryotic genome annotation☆934Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆436Updated last year
- Genome assembly evaluation tool☆467Updated 10 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆442Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆369Updated this week
- Genome-scale protein function classification☆348Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆386Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆683Updated 6 months ago
- adapter trimmer for Oxford Nanopore reads☆373Updated last year
- Plotting scripts for long read sequencing data☆503Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆535Updated last year
- Mummer alignment tool☆526Updated 8 months ago