gamcil / clinker
Gene cluster comparison figure generator
☆553Updated 2 months ago
Alternatives and similar repositories for clinker:
Users that are interested in clinker are comparing it to the libraries listed below
- A complete pipeline for metagenomic analysis☆393Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆478Updated this week
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆381Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆377Updated 3 weeks ago
- A genome visualization python package for comparative genomics☆307Updated last month
- Rapid large-scale prokaryote pan genome analysis☆332Updated 2 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆327Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆439Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆489Updated last year
- Genome assembly evaluation tool☆422Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆333Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignment☆493Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆582Updated 6 months ago
- 🌈 Interactive analysis of metagenomics data☆409Updated 5 months ago
- Build a partitioned pangenome graph from microbial genomes☆255Updated this week
- Official home of genome aligner based upon notion of Cactus graphs☆552Updated this week
- TransDecoder source☆285Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆413Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆323Updated 2 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆576Updated 2 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆267Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆302Updated 6 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆350Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆808Updated 5 months ago
- Sequence correction provided by ONT Research☆436Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆483Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 5 months ago