Gene cluster comparison figure generator
☆655Oct 7, 2026Updated this week
Alternatives and similar repositories for clinker
Users that are interested in clinker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Aug 7, 2026Updated 2 months ago
- A grammar of graphics for comparative genomics☆790Updated this week
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆336Mar 29, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Build a partitioned pangenome graph from microbial genomes☆312Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- ☆32Oct 2, 2026Updated last week
- A genome visualization python package for comparative genomics☆424Jun 14, 2026Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆174Mar 30, 2026Updated 6 months ago
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 2 months ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆602Jul 5, 2026Updated 3 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated last month
- A user-friendly workflow for phylogenomics☆234Sep 28, 2026Updated last week
- An R package designed for drawing gene arrow maps☆102Sep 29, 2025Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 6 months ago
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago
- A list of interesting genome browser and genome visualization programs☆1,110Updated this week
- Systematic search of all known anti-phage systems.☆187Sep 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆434Updated this week
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated last month
- Rapid comparison and dereplication of genomes☆358Updated this week
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated 2 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last month
- Pan-genome wide association studies☆226May 29, 2024Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆481Sep 14, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆240Oct 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- Similarity networks of biosynthetic gene clusters☆178Updated this week
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆234Sep 17, 2026Updated 3 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago