gamcil / clinkerLinks
Gene cluster comparison figure generator
☆631Updated 3 weeks ago
Alternatives and similar repositories for clinker
Users that are interested in clinker are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆591Updated last week
- Fast genome-wide functional annotation through orthology assignment☆687Updated 7 months ago
- Phylogenetic orthology inference for comparative genomics☆823Updated 6 months ago
- A genome visualization python package for comparative genomics☆384Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆494Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆454Updated 2 weeks ago
- Prodigal Gene Prediction Software☆524Updated last year
- Eukaryotic Genome Annotation Pipeline☆375Updated last week
- A complete pipeline for metagenomic analysis☆441Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆443Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆363Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆363Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆631Updated last year
- Genome assembly evaluation tool☆489Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- Genome-scale protein function classification☆362Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆400Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆468Updated last month
- adapter trimmer for Oxford Nanopore reads☆379Updated last year
- Rapid prokaryotic genome annotation☆949Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆889Updated 8 months ago
- Rapid haploid variant calling and core genome alignment☆560Updated last month
- Mummer alignment tool☆544Updated 11 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆570Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆548Updated last year
- ☆284Updated 3 months ago
- An accurate GFF3/GTF lift over pipeline☆520Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆883Updated 3 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆401Updated last week