widdowquinn / pyaniLinks
Application and Python module for average nucleotide identity analyses of microbes.
☆214Updated 2 months ago
Alternatives and similar repositories for pyani
Users that are interested in pyani are comparing it to the libraries listed below
Sorting:
- An updated pipeline for pangenome investigation☆310Updated 6 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆243Updated 2 years ago
- Rapid comparison and dereplication of genomes☆308Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆332Updated last week
- Bacterial ribosomal RNA predictor☆254Updated 2 years ago
- DAS Tool☆157Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆225Updated 5 months ago
- Pan-genome wide association studies☆202Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆213Updated this week
- A tool to circularize genome assemblies☆247Updated last year
- Build a partitioned pangenome graph from microbial genomes☆278Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆193Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆154Updated 5 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆266Updated 9 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆235Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆202Updated 7 months ago
- Classifier for metagenomic sequences☆265Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆247Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆257Updated last week
- fast phage annotation program☆176Updated this week
- Identifying viruses from metagenomic data by deep learning☆145Updated 3 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆139Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆183Updated 2 weeks ago
- Bioinformatics program inStrain☆174Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆163Updated 4 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆122Updated 2 weeks ago