Application and Python module for average nucleotide identity analyses of microbes.
☆216Jul 1, 2025Updated 9 months ago
Alternatives and similar repositories for pyani
Users that are interested in pyani are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 4 months ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- Rapid comparison and dereplication of genomes☆335Nov 10, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆126Feb 13, 2026Updated 2 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆66Aug 12, 2019Updated 6 years ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆375Nov 3, 2025Updated 5 months ago
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated 11 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- Scripts to download genomes from the NCBI FTP servers☆1,071Apr 7, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 4 months ago
- Mummer alignment tool☆554Feb 4, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast genome and metagenome distance estimation using MinHash☆438Sep 19, 2025Updated 6 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆47Feb 5, 2026Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆154Oct 2, 2025Updated 6 months ago
- Build a partitioned pangenome graph from microbial genomes☆297Mar 30, 2026Updated 2 weeks ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- An analysis and visualization platform for 'omics data☆512Apr 8, 2026Updated last week
- ☆22Apr 3, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast genome-wide functional annotation through orthology assignment☆722Mar 24, 2026Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- Create a tree using Mash distances☆187Oct 24, 2023Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆486Apr 3, 2026Updated last week