widdowquinn / pyani
Application and Python module for average nucleotide identity analyses of microbes.
☆200Updated 3 months ago
Alternatives and similar repositories for pyani:
Users that are interested in pyani are comparing it to the libraries listed below
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆202Updated last month
- Scan contig files against PubMLST typing schemes☆206Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆216Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆190Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆188Updated 7 months ago
- An updated pipeline for pangenome investigation☆274Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆313Updated 7 months ago
- Processing pipeline for pan-genome visulization and exploration☆136Updated last year
- BSR-Based Allele Calling Algorithm☆138Updated this week
- fast phage annotation program☆152Updated last month
- Bacterial ribosomal RNA predictor☆231Updated last year
- Rapid comparison and dereplication of genomes☆272Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆126Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆142Updated 6 months ago
- snipit: summarise snps relative to your reference sequence☆151Updated 2 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆181Updated 3 weeks ago
- quality filtering tool for long reads☆308Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆234Updated last month
- A tool to circularize genome assemblies☆233Updated 9 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆154Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆206Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆292Updated last month
- DAS Tool☆142Updated 8 months ago
- Pan-genome wide association studies☆173Updated 7 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆194Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆119Updated 2 months ago
- A user-friendly workflow for phylogenomics☆204Updated this week
- Bioinformatics program inStrain☆155Updated 8 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆195Updated 4 months ago