Application and Python module for average nucleotide identity analyses of microbes.
☆216Jul 1, 2025Updated 8 months ago
Alternatives and similar repositories for pyani
Users that are interested in pyani are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast Whole-Genome Similarity (ANI) Estimation☆450Dec 16, 2025Updated 3 months ago
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆126Feb 13, 2026Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆49Jan 14, 2026Updated 2 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Aug 12, 2019Updated 6 years ago
- Rapid prokaryotic genome annotation☆961Jan 6, 2026Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆374Nov 3, 2025Updated 4 months ago
- Gene cluster comparison figure generator☆638Dec 22, 2025Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An updated pipeline for pangenome investigation☆350Jan 15, 2026Updated 2 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month
- Scripts to download genomes from the NCBI FTP servers☆1,068Jul 28, 2025Updated 7 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 3 months ago
- Fast genome and metagenome distance estimation using MinHash☆436Sep 19, 2025Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Mummer alignment tool☆551Feb 4, 2025Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆47Feb 5, 2026Updated last month
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆153Oct 2, 2025Updated 5 months ago
- Build a partitioned pangenome graph from microbial genomes☆296Updated this week
- Bacterial taxonomy construction and evaluation in R☆15Jan 30, 2024Updated 2 years ago
- An analysis and visualization platform for 'omics data☆510Updated this week
- Fast genome-wide functional annotation through orthology assignment☆710Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Apr 3, 2023Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆215Aug 27, 2025Updated 6 months ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆183Mar 19, 2026Updated last week
- Create a tree using Mash distances☆184Oct 24, 2023Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆481Jan 31, 2026Updated last month