widdowquinn / pyani
Application and Python module for average nucleotide identity analyses of microbes.
☆192Updated 3 weeks ago
Related projects: ⓘ
- Bacterial ribosomal RNA predictor☆218Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆186Updated 2 months ago
- An updated pipeline for pangenome investigation☆260Updated 5 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆210Updated last year
- Scan contig files against PubMLST typing schemes☆192Updated last year
- Rapid comparison and dereplication of genomes☆247Updated last month
- fast phage annotation program☆144Updated 2 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆125Updated 3 years ago
- Processing pipeline for pan-genome visulization and exploration☆132Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆304Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆187Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆164Updated 3 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- A user-friendly workflow for phylogenomics☆197Updated last week
- Pipeline for metabolic annotation of microbial genomes☆138Updated 2 months ago
- DAS Tool☆137Updated 4 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆165Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆212Updated 10 months ago
- Pan-genome wide association studies☆147Updated 3 months ago
- quality filtering tool for long reads☆275Updated last year
- Convert various sequence formats to FASTA☆126Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago
- ☆184Updated last month
- BSR-Based Allele Calling Algorithm☆129Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆167Updated this week
- geNomad: Identification of mobile genetic elements☆187Updated 3 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆142Updated last month
- Synteny and Rearrangement Identifier☆322Updated last week
- Virus Identification By iteRative ANnoTation☆148Updated 5 months ago
- A tool to circularize genome assemblies☆229Updated 5 months ago