rrwick / Assembly-Dereplicator
A tool for removing redundant genomes from a set of assemblies
☆70Updated last year
Alternatives and similar repositories for Assembly-Dereplicator:
Users that are interested in Assembly-Dereplicator are comparing it to the libraries listed below
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆44Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆46Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- whole genome MLST analysis☆40Updated this week
- ☆80Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆105Updated 2 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Recombination-free trees☆57Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 10 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆56Updated 2 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆52Updated 3 years ago