A tool for removing redundant genomes from a set of assemblies
☆84May 6, 2026Updated 2 months ago
Alternatives and similar repositories for Assembly-Dereplicator
Users that are interested in Assembly-Dereplicator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Finding regions of similarity between plasmids☆17Updated this week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated last month
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 5 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 3 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆323Mar 29, 2026Updated 3 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 4 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15May 21, 2026Updated 2 months ago
- ☆15Feb 10, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jul 4, 2026Updated 2 weeks ago
- ☆14Jun 30, 2021Updated 5 years ago