rrwick / Assembly-DereplicatorLinks
A tool for removing redundant genomes from a set of assemblies
☆77Updated last month
Alternatives and similar repositories for Assembly-Dereplicator
Users that are interested in Assembly-Dereplicator are comparing it to the libraries listed below
Sorting:
- Split Kmer Analysis☆65Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Recombination-free trees☆60Updated last month
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 4 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- SeqSero2☆38Updated 3 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆77Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated this week
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Bifrost graph gene caller.☆95Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 11 months ago
- Graph-based assembly phasing☆87Updated 5 months ago
- ☆37Updated 3 years ago
- whole genome MLST analysis☆49Updated 4 months ago
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆59Updated 6 months ago