sanger-pathogens / snp-sitesLinks
Finds SNP sites from a multi-FASTA alignment file
☆261Updated 4 years ago
Alternatives and similar repositories for snp-sites
Users that are interested in snp-sites are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Assembly and binning of metagenomes☆241Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆311Updated 3 months ago
- An overview of all nanopack tools☆260Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- Classifier for metagenomic sequences☆261Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆247Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆230Updated 2 years ago
- Genome Assembly and Annotation Service code☆213Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- A tool to circularize genome assemblies☆243Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆311Updated 4 months ago
- quality filtering tool for long reads☆351Updated last year
- ☆256Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆270Updated 6 months ago
- Filtering and trimming of long read sequencing data☆207Updated 2 years ago
- De-Novo Repeat Discovery Tool☆216Updated 2 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆265Updated 2 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆352Updated 2 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated 2 years ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Pan-genome wide association studies☆197Updated last year
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- A user-friendly workflow for phylogenomics☆214Updated last week