sanger-pathogens / snp-sites
Finds SNP sites from a multi-FASTA alignment file
☆258Updated 4 years ago
Alternatives and similar repositories for snp-sites
Users that are interested in snp-sites are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- quality filtering tool for long reads☆329Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆362Updated 3 years ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆309Updated last year
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- An updated pipeline for pangenome investigation☆298Updated 2 months ago
- TransDecoder source☆288Updated 7 months ago
- Scan contig files against PubMLST typing schemes☆224Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆252Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- Eukaryotic Genome Annotation Pipeline☆346Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆223Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆402Updated 3 months ago
- Synteny and Rearrangement Identifier☆380Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- Classifier for metagenomic sequences☆258Updated 6 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆187Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆506Updated last year
- A tool to circularize genome assemblies☆242Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆371Updated 8 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆338Updated last year
- Fast and accurately polish the genome generated by long reads.☆222Updated 4 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆269Updated 3 months ago
- De-Novo Repeat Discovery Tool☆209Updated last week
- ☆206Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆247Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads☆360Updated last year
- An overview of all nanopack tools☆245Updated last year