edawson / rkmh
Classify sequencing reads using MinHash.
☆48Updated 5 years ago
Alternatives and similar repositories for rkmh:
Users that are interested in rkmh are comparing it to the libraries listed below
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- ☆28Updated this week
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 5 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- ☆19Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- reference free variant assembly☆33Updated last year
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 7 years ago
- Read contamination removal☆25Updated last year
- Population-wide Deletion Calling☆35Updated 7 months ago
- Kraken2 Server☆21Updated last year