edawson / rkmhLinks
Classify sequencing reads using MinHash.
☆48Updated 5 years ago
Alternatives and similar repositories for rkmh
Users that are interested in rkmh are comparing it to the libraries listed below
Sorting:
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Read contamination removal☆25Updated last year
- reference free variant assembly☆33Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆19Updated 8 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- ☆16Updated 7 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 months ago
- Find Unique genomic Regions☆30Updated last week
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆35Updated this week
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆15Updated 3 years ago
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year