Alternatives and similar repositories for rkmh

Users that are interested in rkmh are comparing it to the libraries listed below

• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 2 months ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆36Updated last week
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 2 weeks ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• nickloman / poredb
  ☆18Updated 8 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆16Updated 7 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 7 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• ekg / thesis
  my PhD thesis
  ☆36Updated 6 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 8 months ago
• kamimrcht / ELECTOR
  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
  ☆15Updated 4 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• broadinstitute / pyfrost
  Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
  ☆27Updated last year
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆32Updated 5 years ago