zhanglhbioinfor / DIRECT-NETLinks
☆12Updated 2 years ago
Alternatives and similar repositories for DIRECT-NET
Users that are interested in DIRECT-NET are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- ☆45Updated 4 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- cTPnet Package☆27Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆46Updated last year
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- ☆56Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆40Updated this week
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Single cell omics biology annotations☆50Updated 7 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago
- R implementation of GeneTrajectory☆65Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- ☆27Updated 4 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago