zhanglhbioinfor / DIRECT-NETLinks
☆11Updated 2 years ago
Alternatives and similar repositories for DIRECT-NET
Users that are interested in DIRECT-NET are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆40Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- ☆26Updated last year
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- ☆54Updated 10 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- Single cell omics biology annotations☆51Updated 4 months ago
- ☆26Updated 4 years ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- ☆45Updated last year
- Neural Crest Fate Decisions☆11Updated 6 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆30Updated last month
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- ☆45Updated last month
- ☆21Updated 3 years ago
- ☆58Updated 2 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆18Updated 4 years ago