zhanglhbioinfor / DIRECT-NETLinks
☆12Updated 2 years ago
Alternatives and similar repositories for DIRECT-NET
Users that are interested in DIRECT-NET are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 weeks ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Single cell omics biology annotations☆51Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆26Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- ACTIONet single-cell analysis framework☆42Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- ☆54Updated 11 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- scLearn:Learning for single cell assignment☆35Updated 9 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Multi-omic velocity inference☆111Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated 2 weeks ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- cTPnet Package☆25Updated 3 years ago
- ☆46Updated last year