☆15Jun 4, 2023Updated 2 years ago
Alternatives and similar repositories for DIRECT-NET
Users that are interested in DIRECT-NET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- inference of transcription factor activity at the single cell level☆28Updated this week
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆45Sep 20, 2024Updated last year
- ☆11Apr 26, 2021Updated 5 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆256Jan 16, 2026Updated 4 months ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆32May 11, 2026Updated 2 weeks ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated last month
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆81May 5, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Feb 6, 2023Updated 3 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆17Dec 7, 2025Updated 5 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Kdrew's scripts for handling protein complex map data☆14May 5, 2026Updated 2 weeks ago
- ☆13Mar 17, 2026Updated 2 months ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆15Feb 3, 2026Updated 3 months ago
- An R package for the analysis and interpretation of cell migration tracks.☆14Sep 19, 2025Updated 8 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆65Apr 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆45Apr 1, 2026Updated last month
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 7 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Pipeline to run scE2G☆41Apr 17, 2026Updated last month
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 5 months ago
- ☆59Mar 18, 2026Updated 2 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Aug 9, 2016Updated 9 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆35Apr 10, 2026Updated last month
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Jul 8, 2024Updated last year
- A python implementation of the paper "GraRep: Learning Graph Representations with Global Structural Information".☆11Jun 7, 2017Updated 8 years ago
- Markov chain Monte Carlo with Metropolis-Hasting algorithm☆19Jun 23, 2025Updated 11 months ago
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. MCMCpack — Markov Chain Monte Carlo (MCMC) Package. Homepage: https://CRAN…☆13Aug 28, 2024Updated last year