Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data
☆18Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for fasterqParseR
Users that are interested in fasterqParseR are comparing it to the libraries listed below
Sorting:
- ☆21Mar 2, 2026Updated last week
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- Cell type pipes for R☆52Jan 27, 2024Updated 2 years ago
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 2 months ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated last year
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 6 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆100Feb 18, 2026Updated 2 weeks ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Jan 6, 2026Updated 2 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Dec 19, 2025Updated 2 months ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆31Dec 6, 2024Updated last year
- The Monod package fits CME models to sequencing data.☆33Updated this week
- ☆12Dec 14, 2021Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Feb 26, 2026Updated last week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆33Aug 22, 2025Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆100May 27, 2025Updated 9 months ago
- R package to analyze single cell DNA sequencing data.☆10Jan 28, 2026Updated last month
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Feb 25, 2026Updated last week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Nov 7, 2025Updated 4 months ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Jan 22, 2026Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 3 months ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated 10 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- ImageJ macro for microglia morphology analysis☆17Jan 13, 2026Updated last month
- Implementation of LTFH++☆11Nov 17, 2025Updated 3 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- ☆12Mar 15, 2025Updated 11 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Updated this week
- ☆11Feb 24, 2026Updated last week
- ☆11Jan 7, 2021Updated 5 years ago
- set of functions for genomics data analysis☆10Apr 22, 2022Updated 3 years ago
- ☆17Updated this week