Nusob888 / fasterqParseRLinks
Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data
☆18Updated last year
Alternatives and similar repositories for fasterqParseR
Users that are interested in fasterqParseR are comparing it to the libraries listed below
Sorting:
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- ☆20Updated 2 years ago
- A single cell sequencing read simulator.☆33Updated last year
- binned motif enrichment analysis and visualisation☆43Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- scover☆24Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- ☆32Updated 11 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Docker container for genomics analyses in R.☆26Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆48Updated 11 months ago
- ☆41Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago