Nusob888 / fasterqParseRLinks
Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data
☆17Updated last year
Alternatives and similar repositories for fasterqParseR
Users that are interested in fasterqParseR are comparing it to the libraries listed below
Sorting:
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ☆20Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- scover☆23Updated last year
- binned motif enrichment analysis and visualisation☆41Updated last week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated last year
- Single-cell RNA Processing Software☆11Updated last month
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 2 weeks ago
- ☆32Updated 6 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 3 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆23Updated 8 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆26Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- ☆38Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆17Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago