Alternatives and similar repositories for fasterqParseR

Users that are interested in fasterqParseR are comparing it to the libraries listed below

• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆44Updated 2 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• YosefLab / ImpulseDE2
  ☆41Updated 3 years ago
• immunogenomics / scHLApers
  Code to run the scHLApers pipeline for personalized single-cell HLA quantification
  ☆17Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆22Updated 3 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆23Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 months ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 8 months ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆17Updated this week
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆26Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• OscarGVelasco / LotsOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated 3 months ago
• UPSUTER / GEMLI
  ☆33Updated 11 months ago
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆11Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆31Updated 2 years ago