scverse / decouplerLinks
Python package to perform enrichment analysis from omics data.
☆218Updated last week
Alternatives and similar repositories for decoupler
Users that are interested in decoupler are comparing it to the libraries listed below
Sorting:
- LIANA+: an all-in-one framework for cell-cell communication☆227Updated last month
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆166Updated last week
- Single-cell perturbation analysis☆196Updated last week
- muon is a multimodal omics Python framework☆245Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆202Updated 6 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆238Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆166Updated 4 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆173Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆213Updated 2 months ago
- Batch balanced KNN☆169Updated last year
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- Test genes for Spatial Variation☆175Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆68Updated last week
- Conversion between scRNA-seq objects☆184Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆140Updated 3 weeks ago
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆213Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆128Updated last year
- Reference mapping for single-cell genomics☆381Updated last month
- Scanpy Tutorials.☆219Updated last week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated 3 weeks ago
- data and model repository for single-cell data☆135Updated last year
- Benchmarking analysis of data integration tools☆373Updated 7 months ago
- Convert between AnnData and SingleCellExperiment☆138Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆133Updated 6 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago