saezlab / dorothea
R package to access DoRothEA's regulons
☆143Updated last year
Alternatives and similar repositories for dorothea:
Users that are interested in dorothea are comparing it to the libraries listed below
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- Tools for single-cell data processing☆123Updated 10 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆121Updated 3 weeks ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆138Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆199Updated 8 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Clonotype Neighbor Graph Analysis☆86Updated 2 weeks ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- A tool for detecting somatic variants in single cell data☆197Updated 6 months ago
- Gene set scoring for single-cell data☆147Updated 5 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆118Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated 2 weeks ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- AUCell: score single cells with gene regulatory networks☆149Updated last year
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Conversion between scRNA-seq objects☆170Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆142Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆102Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 5 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆143Updated 4 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago