saezlab / dorotheaLinks
R package to access DoRothEA's regulons
☆150Updated last year
Alternatives and similar repositories for dorothea
Users that are interested in dorothea are comparing it to the libraries listed below
Sorting:
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Tools for single-cell data processing☆126Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 10 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆92Updated last week
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- ☆71Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆141Updated last year
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- A docker image for single-cell analysis☆89Updated 7 months ago
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- ☆70Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆142Updated last month