saezlab / dorotheaLinks
R package to access DoRothEA's regulons
☆153Updated last year
Alternatives and similar repositories for dorothea
Users that are interested in dorothea are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆110Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆92Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆121Updated this week
- Single-Cell Clustering Assessment Framework☆106Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- A docker image for single-cell analysis☆96Updated 3 weeks ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated 2 weeks ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆137Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆25Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆135Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- software to detect doublets☆95Updated 10 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆121Updated 6 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆96Updated 6 years ago