saezlab / dorotheaLinks
R package to access DoRothEA's regulons
☆154Updated last year
Alternatives and similar repositories for dorothea
Users that are interested in dorothea are comparing it to the libraries listed below
Sorting:
- Clonotype Neighbor Graph Analysis☆94Updated 5 months ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- SingleCellNet: classify single cells across species and platforms☆140Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆123Updated this week
- Using TCR and expression for sequence embedding☆62Updated 3 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- A docker image for single-cell analysis☆103Updated 3 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆120Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆98Updated 6 years ago
- Tools for single-cell data processing☆131Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆71Updated last year
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago