Alternatives and similar repositories for OmnipathR

Users that are interested in OmnipathR are comparing it to the libraries listed below

• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆195Updated last week
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 9 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 6 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆112Updated last week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆209Updated last week
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆272Updated 7 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 10 months ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated last month
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆89Updated 11 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆136Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆152Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆194Updated last year
• theMILOlab / SPATA2
  A Toolbox for Spatial Transcriptomics Analysis
  ☆159Updated 6 months ago
• campbio / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆151Updated 8 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆210Updated 3 months ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆124Updated last week
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆183Updated 4 years ago
• quadbio / Pando
  Multiome GRN inference.
  ☆130Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆110Updated 2 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆131Updated 3 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆97Updated 11 months ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆139Updated 2 years ago
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆114Updated 2 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated last month
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆191Updated last week
• hbc / knowledgebase
  recipes that save time
  ☆142Updated 2 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆74Updated 2 weeks ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated last year