Alternatives and similar repositories for OmnipathR

Users that are interested in OmnipathR are comparing it to the libraries listed below

• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 6 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆184Updated 2 weeks ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆112Updated 2 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆103Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆123Updated 2 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆149Updated last year
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated 11 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆130Updated 7 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆194Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆154Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆176Updated last week
• quadbio / Pando
  Multiome GRN inference.
  ☆124Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆71Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated last month
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆153Updated last month
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆91Updated 7 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆165Updated 2 years ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆75Updated 3 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆196Updated 3 months ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆88Updated 7 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆105Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆208Updated 10 months ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆68Updated last month
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆107Updated 2 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆198Updated last month
• ludvigla / semla
  ☆87Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆82Updated 3 weeks ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 4 months ago