saezlab / OmnipathR

Related projects ⓘ

Alternatives and complementary repositories for OmnipathR

• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆89Updated this week
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆158Updated 3 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆82Updated 2 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆112Updated 2 weeks ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆59Updated 4 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆77Updated 7 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆110Updated 7 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆68Updated 2 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆92Updated 5 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆137Updated 2 weeks ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆61Updated 5 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated 9 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆113Updated 2 months ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆77Updated this week
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆88Updated 8 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆75Updated 9 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆87Updated 11 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆100Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated last month
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆194Updated last month
• niaid / dsb
  Normalize CITEseq Data
  ☆63Updated 5 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆63Updated 6 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆150Updated last year
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆75Updated last year
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆57Updated 11 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆93Updated last year
• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆149Updated 2 weeks ago
• MangiolaLaboratory / sccomp
  Testing differences in cell type proportions from single-cell data.
  ☆94Updated last week