saezlab / OmnipathRLinks
R client for the OmniPath web service
☆146Updated last week
Alternatives and similar repositories for OmnipathR
Users that are interested in OmnipathR are comparing it to the libraries listed below
Sorting:
- Easy single cell analysis platform for enrichment☆201Updated 3 weeks ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆281Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆213Updated last week
- AnnData interoperability in R☆134Updated this week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆212Updated 4 months ago
- An R interface to enrichR☆93Updated 10 months ago
- Latent Embedding Multivariate Regression☆97Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆140Updated last year
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- Automated cell type classification☆114Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Cytometry dATa anALYsis Tools☆70Updated last month
- R package for single cell and other data analysis using diffusion maps☆91Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated last month
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆249Updated this week
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 10 months ago
- Multiome GRN inference.☆131Updated last year
- The package wrapping the book, for deployment via the Bioconductor build system.☆97Updated last year
- Interactively analyze single cell genomic data☆184Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆178Updated last year
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆127Updated last month
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Updated 4 years ago
- Conversion between scRNA-seq objects☆194Updated this week
- A Toolbox for Spatial Transcriptomics Analysis☆162Updated 7 months ago
- Unified access to several second-generation deconvolution methods☆88Updated this week
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated last month