saezlab / OmnipathRLinks
R client for the OmniPath web service
☆152Updated last week
Alternatives and similar repositories for OmnipathR
Users that are interested in OmnipathR are comparing it to the libraries listed below
Sorting:
- Easy single cell analysis platform for enrichment☆207Updated 3 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Updated 9 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆216Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆119Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆283Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- An R interface to enrichR☆93Updated 11 months ago
- Interactively analyze single cell genomic data☆184Updated 2 weeks ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Updated 4 years ago
- Multiome GRN inference.☆133Updated last year
- SingleCellNet: classify single cells across species and platforms☆140Updated 2 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆215Updated last month
- Pan-Cancer Single Cell Classifier☆83Updated last year
- R package for single cell and other data analysis using diffusion maps☆92Updated 2 months ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆98Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- Latent Embedding Multivariate Regression☆98Updated last year
- AnnData interoperability in R☆147Updated this week
- A Bayesian model for compositional single-cell data analysis☆187Updated 2 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆256Updated 2 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Fast Wilcoxon and auROC☆203Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆230Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 2 months ago
- R package to access DoRothEA's regulons☆154Updated last year
- Gene set variation analysis☆232Updated last month
- AUCell: score single cells with gene regulatory networks☆182Updated last year