R client for the OmniPath web service
☆176Oct 26, 2026Updated last week
Alternatives and similar repositories for OmnipathR
Users that are interested in OmnipathR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆313Oct 26, 2026Updated last week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Easy single cell analysis platform for enrichment☆238Oct 27, 2026Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆204Aug 12, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆684Oct 23, 2026Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆129Aug 24, 2026Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆130Jan 30, 2023Updated 3 years ago
- Methods to discover gene programs on single-cell data☆213Oct 12, 2026Updated 3 weeks ago
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated 2 weeks ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆107Jan 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆325Updated this week
- Python package to perform enrichment analysis from omics data.☆301Updated this week
- Easy and comprehensive biological network reconstruction and analysis☆38Sep 8, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Jan 22, 2026Updated 9 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆106May 4, 2026Updated 5 months ago
- Spatial omics analysis toolbox☆395Oct 27, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multi-sample multi-group scRNA-seq analysis tools☆248Jul 6, 2026Updated 3 months ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆315Jun 30, 2026Updated 4 months ago
- Multi-subject Single Cell Deconvolution☆318Mar 4, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 8 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆164Updated this week
- R package to access DoRothEA's regulons☆163Feb 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆204Jan 13, 2026Updated 9 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 9 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆271Jul 8, 2026Updated 3 months ago