Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
☆158Jul 24, 2026Updated 3 months ago
Alternatives and similar repositories for hybracter
Users that are interested in hybracter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Oct 27, 2026Updated last week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆246Oct 8, 2026Updated 3 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆239Oct 21, 2026Updated last week
- An updated pipeline for pangenome investigation☆379Oct 26, 2026Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Updated this week
- ☆39Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆332Oct 10, 2026Updated 3 weeks ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- Recombination-free trees☆75Jul 24, 2026Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Updated this week
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- Rapid & standardized genome annotation using protein structural information☆81Oct 14, 2026Updated 2 weeks ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆114Oct 12, 2026Updated 3 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Phage Annotation using Protein Structures☆179Oct 13, 2026Updated 3 weeks ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Oct 22, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Updated this week
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month