gbouras13 / hybracterLinks
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
☆145Updated 3 months ago
Alternatives and similar repositories for hybracter
Users that are interested in hybracter are comparing it to the libraries listed below
Sorting:
- Reorients assembled microbial sequences☆130Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆203Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated 8 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆71Updated 5 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Find endogenous viral elements in genomes☆20Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- ☆150Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆196Updated 2 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Precise host read removal☆108Updated 3 months ago