Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
☆148Jan 9, 2026Updated 3 months ago
Alternatives and similar repositories for hybracter
Users that are interested in hybracter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Apr 8, 2026Updated last week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- fast phage annotation program☆201Feb 1, 2026Updated 2 months ago
- Bifrost graph gene caller.☆98Mar 29, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated 11 months ago
- Phage Annotation using Protein Structures☆156Updated this week
- a short-read polishing tool for long-read assemblies☆212Sep 19, 2025Updated 6 months ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated 2 weeks ago
- Plasmid analysis using rearrangement distances☆50Apr 8, 2026Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆106Mar 2, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆82Updated this week
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago
- ☆15Feb 10, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Genome size estimation from long read overlaps☆82Updated this week
- Precise host read removal☆119Mar 28, 2026Updated 2 weeks ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆34Mar 27, 2024Updated 2 years ago
- ☆30Updated this week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆226Sep 6, 2025Updated 7 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated 2 weeks ago