Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
☆154Jul 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for hybracter
Users that are interested in hybracter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆236Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆665Aug 7, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆222Updated this week
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆181Apr 16, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- An updated pipeline for pangenome investigation☆369Jul 2, 2026Updated last month
- Phage Annotation using Protein Structures☆171Updated this week
- ☆36Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆108Jun 25, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 months ago
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Updated this week
- Recombination-free trees☆72Jul 24, 2026Updated 3 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆91Jul 30, 2026Updated 2 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 11 months ago
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 5 months ago
- A Python package to update the MLST database for the mlst tool.☆29Jul 22, 2026Updated 3 weeks ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆36Mar 27, 2024Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Updated this week
- ☆15Jul 24, 2026Updated 3 weeks ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 4 months ago