gbouras13 / hybracterLinks
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
☆141Updated last month
Alternatives and similar repositories for hybracter
Users that are interested in hybracter are comparing it to the libraries listed below
Sorting:
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆190Updated 3 weeks ago
- Reorients assembled microbial sequences☆128Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated last year
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Find endogenous viral elements in genomes☆16Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆155Updated 5 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆39Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆139Updated 6 months ago
- ☆146Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated last week
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆174Updated 3 weeks ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆104Updated last year
- IS mapping software☆56Updated 3 years ago
- A repository for collecting GPU basecalling stats☆64Updated 2 weeks ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆106Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago