AdmiralenOla / Scoary
Pan-genome wide association studies
☆150Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for Scoary
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆127Updated 8 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆108Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆124Updated last month
- Processing pipeline for pan-genome visulization and exploration☆134Updated last year
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆174Updated 5 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆110Updated last week
- "Reads to report" for public health and clinical microbiology☆136Updated 8 months ago
- Bioinformatics program inStrain☆147Updated 6 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆129Updated this week
- fast phage annotation program☆148Updated this week
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆108Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆148Updated 11 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- Making whole bacterial genome sequencing data analysis easy☆99Updated 2 weeks ago
- ☆119Updated 5 months ago
- ☆116Updated this week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆191Updated 2 weeks ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆130Updated last year
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- Foreign Contamination Screening caller scripts and documentation☆107Updated this week
- Create a tree using Mash distances☆156Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆128Updated this week
- ☆152Updated 2 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆117Updated 6 months ago
- A toolbox for comparative genomics.☆97Updated 3 years ago