bacpop / PopPUNKLinks
PopPUNK π¨βπ€ (POPulation Partitioning Using Nucleotide Kmers)
β100Updated last week
Alternatives and similar repositories for PopPUNK
Users that are interested in PopPUNK are comparing it to the libraries listed below
Sorting:
- a collection of scripts for organising bacterial genomes by speciesβ77Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matricesβ60Updated 5 months ago
- Rapid determination of appropriate reference genomes.β98Updated 6 months ago
- A tool for removing redundant genomes from a set of assembliesβ73Updated last year
- GTDB taxonomy taxdump files with trackable TaxIdsβ56Updated 3 months ago
- IS mapping softwareβ56Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ70Updated 3 years ago
- Reorients assembled microbial sequencesβ124Updated 4 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)β46Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classesβ79Updated 11 months ago
- Split Kmer Analysisβ65Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.β100Updated 3 years ago
- Recombination-free treesβ59Updated 4 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.β50Updated 3 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignmentsβ74Updated last year
- whole genome MLST analysisβ46Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesβ49Updated 2 weeks ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifiβ¦β41Updated 4 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic treesβ90Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graafβ49Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)β62Updated 2 years ago
- Prediction of prophages from bacterial genomesβ79Updated last month
- Precise host read removalβ103Updated last month
- Ley Lab MetaGenome Profiler DataBase generatorβ50Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasetsβ73Updated last year
- Split k-mer analysis β version 2β87Updated 2 weeks ago
- SeqSero2β38Updated last year
- GraftM - Rapid community profiles from metagenomesβ46Updated last year
- A toolbox for comparative genomics.β104Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesβ54Updated 2 years ago