ythuang0522 / homopolishLinks
High-quality Nanopore-only genome polisher
☆69Updated last year
Alternatives and similar repositories for homopolish
Users that are interested in homopolish are comparing it to the libraries listed below
Sorting:
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- ☆30Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Split k-mer analysis – version 2☆103Updated 2 weeks ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆60Updated 8 months ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- k-mer learning materials☆82Updated 10 months ago
- Graph-based assembly phasing☆90Updated last month
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- SeqSero2☆39Updated 3 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 8 months ago
- Split Kmer Analysis☆66Updated 3 years ago
- ☆84Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆126Updated 3 weeks ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- Bifrost graph gene caller.☆97Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- 🪡Correct and scaffold assemblies using long reads☆56Updated 4 months ago