ythuang0522 / homopolish
High-quality Nanopore-only genome polisher
☆68Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for homopolish
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆36Updated 11 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 6 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- ☆71Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- ☆58Updated 3 weeks ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆31Updated 3 weeks ago
- Synteny Imager☆60Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆91Updated 5 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- ☆78Updated last year
- ☆27Updated 10 months ago
- A list of software for pangenomics☆85Updated this week
- Assembly statistic visualisation☆88Updated 10 months ago
- Simple pileup-based variant caller☆81Updated 7 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆25Updated last month
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 3 years ago
- ☆33Updated 3 weeks ago
- Split Kmer Analysis☆63Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Predict 5mC in PacBio HiFi reads☆32Updated last week