High-quality Nanopore-only genome polisher
☆71Aug 16, 2024Updated last year
Alternatives and similar repositories for homopolish
Users that are interested in homopolish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- a short-read polishing tool for long-read assemblies☆219Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- PEPPER-Margin-DeepVariant☆259Jan 12, 2024Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- ☆278Jun 26, 2025Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆84Updated this week
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 6 months ago
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago