Standalone Python re-implementation of the POLCA polisher from MaSuRCA
☆44Aug 20, 2025Updated 7 months ago
Alternatives and similar repositories for pypolca
Users that are interested in pypolca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆82Updated this week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Apr 8, 2026Updated last week
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 7 months ago
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- High-quality Nanopore-only genome polisher☆70Aug 16, 2024Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated 11 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- Plasmid analysis using rearrangement distances☆50Apr 8, 2026Updated last week
- Phage Annotation using Protein Structures☆156Updated this week
- ☆249Apr 1, 2026Updated 2 weeks ago
- Split k-mer analysis – version 2☆105Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆226Sep 6, 2025Updated 7 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- Rapid & standardized genome annotation using protein structural information☆60Apr 8, 2026Updated last week
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago