Standalone Python re-implementation of the POLCA polisher from MaSuRCA
☆45Aug 20, 2025Updated 8 months ago
Alternatives and similar repositories for pypolca
Users that are interested in pypolca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆150Jan 9, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assemble bacterial isolate genomes from Nanopore reads☆131Jan 22, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆86Updated this week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Apr 27, 2026Updated last week
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- Recombination-free trees☆65Apr 26, 2026Updated last week
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆174Apr 16, 2025Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Plasmid analysis using rearrangement distances☆53Updated this week
- Phage Annotation using Protein Structures☆158Apr 27, 2026Updated last week
- ☆248Updated this week
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 10 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆228Sep 6, 2025Updated 7 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- Rapid & standardized genome annotation using protein structural information☆63Updated this week
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago