Standalone Python re-implementation of the POLCA polisher from MaSuRCA
☆47Aug 20, 2025Updated 11 months ago
Alternatives and similar repositories for pypolca
Users that are interested in pypolca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆152Updated this week
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 3 weeks ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ☆258Jul 1, 2026Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆367Jul 2, 2026Updated 3 weeks ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated 2 weeks ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago