rpetit3 / dragonflyeLinks
Assemble bacterial isolate genomes from Nanopore reads
☆126Updated 8 months ago
Alternatives and similar repositories for dragonflye
Users that are interested in dragonflye are comparing it to the libraries listed below
Sorting:
- Create a tree using Mash distances☆171Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆141Updated last month
- a short-read polishing tool for long-read assemblies☆192Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆190Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆165Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆174Updated 3 weeks ago
- ☆129Updated last week
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Foreign Contamination Screening caller scripts and documentation☆139Updated 6 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- A toolbox for comparative genomics.☆104Updated 4 years ago
- SKESA assembler☆123Updated 11 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆155Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- Reorients assembled microbial sequences☆128Updated last month
- ☆146Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- DAS Tool☆158Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Interactive quality assessment of genome assemblies☆109Updated 5 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- Bioinformatics program inStrain☆176Updated 5 months ago