rpetit3 / dragonflye

Related projects ⓘ

Alternatives and complementary repositories for dragonflye

• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆108Updated last week
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆145Updated 5 months ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆156Updated last year
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆137Updated 2 weeks ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆178Updated last month
• ncbi / SKESA
  SKESA assembler
  ☆112Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆108Updated 6 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆150Updated 5 months ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆71Updated 3 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated 2 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆124Updated last month
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆71Updated 11 months ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆91Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆136Updated 2 years ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆107Updated this week
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆174Updated 5 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆148Updated this week
• wdecoster / chopper
  ☆152Updated 2 months ago
• artic-network / fieldbioinformatics
  The ARTIC field bioinformatics pipeline
  ☆116Updated this week
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆148Updated 11 months ago
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆106Updated last year
• replikation / What_the_Phage
  WtP: Phage identification via nextflow and docker or singularity
  ☆103Updated 3 months ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆97Updated 3 years ago
• klebgenomics / Kleborate
  ☆116Updated this week
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆170Updated 4 months ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆77Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆127Updated 8 months ago