rpetit3 / dragonflyeLinks
Assemble bacterial isolate genomes from Nanopore reads
☆127Updated 5 months ago
Alternatives and similar repositories for dragonflye
Users that are interested in dragonflye are comparing it to the libraries listed below
Sorting:
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- Create a tree using Mash distances☆167Updated last year
- Foreign Contamination Screening caller scripts and documentation☆132Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- SKESA assembler☆120Updated 9 months ago
- a short-read polishing tool for long-read assemblies☆172Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆110Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- ☆137Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆202Updated last year
- Reorients assembled microbial sequences☆121Updated 3 months ago
- DAS Tool☆153Updated last year
- The ARTIC field bioinformatics pipeline☆125Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- ☆127Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆137Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆165Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago