Assemble bacterial isolate genomes from Nanopore reads
☆136Jan 22, 2025Updated last year
Alternatives and similar repositories for dragonflye
Users that are interested in dragonflye are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated 2 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆152Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆519May 21, 2026Updated 2 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 2 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Jun 11, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- An updated pipeline for pangenome investigation☆367Jul 2, 2026Updated 3 weeks ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last week
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆32Jul 17, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 3 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated last month
- Randomly subsample sequencing reads or alignments☆271Updated this week
- ☆33Updated this week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 6 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆203Jun 10, 2026Updated last month
- BSR-Based Allele Calling Algorithm☆149Updated this week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Plasmid analysis using rearrangement distances☆56Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Recombination-free trees☆72Apr 26, 2026Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆66Jan 22, 2026Updated 6 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated last month