Alternatives and similar repositories for dragonflye:

Users that are interested in dragonflye are comparing it to the libraries listed below

• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆121Updated last week
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆155Updated 9 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated last week
• lskatz / mashtree
  Create a tree using Mash distances
  ☆159Updated last year
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆115Updated last year
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆108Updated last week
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆75Updated 7 months ago
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆140Updated this week
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆107Updated last year
• ncbi / SKESA
  SKESA assembler
  ☆115Updated 5 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆114Updated 3 weeks ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated 10 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆77Updated last week
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆69Updated last year
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆132Updated last year
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆188Updated 8 months ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆93Updated 2 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆140Updated 5 months ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆83Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆131Updated this week
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆139Updated 3 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆195Updated last week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated 3 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆141Updated 2 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆191Updated 9 months ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆103Updated 4 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆146Updated 10 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆91Updated last year
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆101Updated 3 years ago