Alternatives and similar repositories for Perfect-bacterial-genome-tutorial

Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below

• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆153Updated last week
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆96Updated 3 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆216Updated 3 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆122Updated last year
• gbouras13 / pharokka
  fast phage annotation program
  ☆167Updated 3 weeks ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆131Updated 2 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆67Updated 2 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆152Updated 3 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 2 months ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated 3 weeks ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆110Updated 2 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆233Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆79Updated 2 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated last year
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆95Updated 2 years ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆198Updated 5 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆75Updated 2 years ago
• thackl / detectEVE
  Find endogenous viral elements in genomes
  ☆14Updated 3 weeks ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆95Updated last year
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆104Updated 4 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆171Updated 4 years ago
• egonozer / in_silico_pcr
  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
  ☆47Updated 3 months ago
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆145Updated 2 months ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆72Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆115Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated last month
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆121Updated 3 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆160Updated last week
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆149Updated 3 months ago