☆158Jul 24, 2026Updated 3 months ago
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆246Oct 8, 2026Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆516Jul 17, 2026Updated 3 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- quality filtering tool for long reads☆423Sep 17, 2025Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- ☆28Aug 2, 2023Updated 3 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆36Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- An updated pipeline for pangenome investigation☆378Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 2, 2026Updated 3 weeks ago
- ☆17May 19, 2022Updated 4 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- Recombination-free trees☆75Jul 24, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A user-friendly workflow for phylogenomics☆235Sep 28, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆157Jun 10, 2026Updated 4 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆381Nov 3, 2025Updated 11 months ago