rrwick / Perfect-bacterial-genome-tutorialLinks
☆137Updated last year
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆161Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- fast phage annotation program☆166Updated this week
- geNomad: Identification of mobile genetic elements☆246Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆147Updated this week
- Metagenomic classification of long-read sequencing data☆85Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆151Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆231Updated 3 months ago
- Reorients assembled microbial sequences☆121Updated 3 months ago
- Toolbox for comparative genomics of MAGs☆84Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆198Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 10 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆154Updated last week
- Metatranscriptomics Tutorial☆62Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- The ARTIC field bioinformatics pipeline☆124Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆147Updated last week
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆150Updated 2 months ago