rrwick / Perfect-bacterial-genome-tutorial
☆132Updated 10 months ago
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial:
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below
- A tool for generating consensus long-read assemblies for bacterial genomes☆125Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆94Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆145Updated 3 weeks ago
- fast phage annotation program☆161Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆118Updated last year
- geNomad: Identification of mobile genetic elements☆234Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆206Updated last month
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆92Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆64Updated this week
- DDBJ Fast Annotation and Submission Tool☆80Updated last week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆194Updated 3 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆75Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆82Updated 3 weeks ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆77Updated 8 months ago
- Reorients assembled microbial sequences☆116Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆222Updated last month
- Toolbox for comparative genomics of MAGs☆83Updated 2 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆142Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated 2 months ago
- Systematic search of all known anti-phage systems.☆97Updated 3 months ago
- ☆206Updated 3 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆133Updated last year
- Making whole bacterial genome sequencing data analysis easy☆106Updated 2 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆78Updated this week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 8 months ago
- ☆186Updated 2 weeks ago