☆155Jun 18, 2024Updated last year
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆225Mar 31, 2026Updated last week
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 3 months ago
- Bacterial GWAS analysis☆47Apr 2, 2026Updated last week
- quality filtering tool for long reads☆397Sep 17, 2025Updated 6 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- ☆27Aug 2, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆618Feb 18, 2026Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- Sequence correction provided by ONT Research☆503Dec 8, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 3 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆132Feb 26, 2024Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆484Apr 3, 2026Updated last week
- ☆16May 19, 2022Updated 3 years ago
- Pan-genome wide association studies☆213May 29, 2024Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆176Feb 26, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- k-mers and the like☆22Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆138Mar 26, 2026Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Mar 25, 2026Updated 2 weeks ago
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated 3 weeks ago
- ☆248Apr 1, 2026Updated last week
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- Toolbox for comparative genomics of MAGs☆88Mar 25, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆212Mar 3, 2026Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆65Jan 19, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆226Sep 6, 2025Updated 7 months ago
- Plasmid analysis using rearrangement distances☆50Mar 23, 2026Updated 2 weeks ago