☆160Jul 24, 2026Updated last month
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆239Updated this week
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated last month
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 7 months ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆156Jul 24, 2026Updated last month
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- quality filtering tool for long reads☆416Sep 17, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last week
- ☆28Aug 2, 2023Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆680Aug 7, 2026Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆527May 20, 2026Updated 4 months ago
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆268Jun 11, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆183Aug 10, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated last month
- ☆17May 19, 2022Updated 4 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆512Jul 17, 2026Updated 2 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Pan-genome wide association studies☆225May 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆231May 9, 2026Updated 4 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Sep 9, 2026Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆156Jun 10, 2026Updated 3 months ago
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 2 months ago
- Recombination-free trees☆73Jul 24, 2026Updated last month
- ☆261Sep 13, 2026Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last month
- De novo genome assembler for long uncorrected reads☆235Nov 15, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆71Feb 9, 2025Updated last year
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 8 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated last week
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆238Sep 11, 2026Updated last week