☆157Jun 18, 2024Updated last year
Alternatives and similar repositories for Perfect-bacterial-genome-tutorial
Users that are interested in Perfect-bacterial-genome-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆230Apr 27, 2026Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 9 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆132Jan 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bacterial GWAS analysis☆54May 13, 2026Updated last week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jan 9, 2026Updated 4 months ago
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 5 months ago
- ☆27Aug 2, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆642May 15, 2026Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36May 14, 2026Updated last week
- Sequence correction provided by ONT Research☆513Apr 8, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An updated pipeline for pangenome investigation☆358May 13, 2026Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆493Apr 3, 2026Updated last month
- ☆17May 19, 2022Updated 4 years ago
- Pan-genome wide association studies☆218May 29, 2024Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆95Mar 30, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- k-mers and the like☆22May 4, 2026Updated 2 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆141Apr 10, 2026Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆32Apr 26, 2026Updated 3 weeks ago
- Recombination-free trees☆68Apr 26, 2026Updated 3 weeks ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆219May 9, 2026Updated last week
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- ☆251May 4, 2026Updated 2 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆512Updated this week
- Toolbox for comparative genomics of MAGs☆90Apr 28, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆66Jan 19, 2026Updated 4 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆72Feb 9, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆230Sep 6, 2025Updated 8 months ago
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated last week