rrwick / Verticall
Recombination-free trees
☆57Updated last year
Alternatives and similar repositories for Verticall:
Users that are interested in Verticall are comparing it to the libraries listed below
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 7 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- IslandPath standalone software☆31Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Bacterial GWAS analysis☆36Updated 2 months ago
- Gene-flank analysis tool☆27Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated last month
- Calculate assocations between genes and traits☆22Updated 3 months ago
- whole genome MLST analysis☆40Updated 9 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- ☆36Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Colinear block visualisation tool☆30Updated last year
- Genome size estimation from long read overlaps☆48Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆26Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Intra-species bacterial contamination detection☆25Updated this week