rrwick / VerticallLinks
Recombination-free trees
☆60Updated 2 months ago
Alternatives and similar repositories for Verticall
Users that are interested in Verticall are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Bifrost graph gene caller.☆95Updated last month
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
- Bacterial GWAS analysis☆45Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Plasmid analysis using rearrangement distances☆46Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Split k-mer analysis – version 2☆96Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Genome size estimation from long read overlaps☆62Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated 2 weeks ago
- Colinear block visualisation tool☆31Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- Order and orientation of complete bacterial genomes☆29Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago