romanhaa / CerebroLinks
Visualization of scRNA-seq data.
☆99Updated 2 years ago
Alternatives and similar repositories for Cerebro
Users that are interested in Cerebro are comparing it to the libraries listed below
Sorting:
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆96Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆70Updated last year
- ☆71Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- A docker image for single-cell analysis☆88Updated 7 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 4 months ago
- Tools for single-cell data processing☆126Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- ☆69Updated 7 years ago
- Java tools for analyzing Drop-seq data☆130Updated 2 weeks ago
- ☆61Updated 5 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- ☆86Updated last year
- Doublet detection in single-cell RNA-seq data.☆92Updated 6 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago