☆16Jul 9, 2024Updated 2 years ago
Alternatives and similar repositories for scExtras
Users that are interested in scExtras are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆11Sep 2, 2021Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 5 years ago
- ☆12Nov 7, 2017Updated 8 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 8 years ago
- NAnostring quality Control dasHbOard.☆11Updated this week
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 6 years ago
- Overview repo for the omicidx project -- start here!☆14Updated this week
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- ☆11Jun 26, 2020Updated 6 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- ☆17Sep 30, 2026Updated last month
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 5 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- Predicting transcription factor binding in single cells through deep learning☆15Oct 14, 2022Updated 4 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆28Oct 17, 2018Updated 8 years ago
- Workflows for comparative analyses of single-cell RNA sequencing data, migrated to the OSCA book.☆11May 15, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- Visualise correlation results and test significancies of these☆25Feb 7, 2020Updated 6 years ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆15Oct 11, 2021Updated 5 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago