Alternatives and similar repositories for scExtras

Users that are interested in scExtras are comparing it to the libraries listed below

• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 11 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated 3 months ago
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆43Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 4 years ago
• SGDDNB / hrpi
  Rmarkdown / compiled html files for human reprogramming dataset analysis
  ☆18Updated 5 years ago
• nyuhuyang / scRNAseq-SSCs
  Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data
  ☆11Updated 3 years ago
• meichendong / SCDC
  SCDC
  ☆45Updated 3 months ago
• gxiaolab / scAllele
  ☆38Updated last month
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆15Updated 6 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 5 months ago
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆75Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated 2 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated this week
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 3 months ago
• molgenis / scRNA-seq
  ☆18Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago