Morriseylab / scExtrasLinks
☆14Updated last year
Alternatives and similar repositories for scExtras
Users that are interested in scExtras are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆50Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 6 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆15Updated 9 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- ☆18Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆14Updated 11 months ago
- ☆12Updated 5 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- SCDC☆45Updated 6 months ago
- ☆32Updated 11 months ago