Morriseylab / scExtras
☆12Updated 8 months ago
Alternatives and similar repositories for scExtras:
Users that are interested in scExtras are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆33Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆18Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆16Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- ☆31Updated 5 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 2 months ago
- A pipeline for scRNA-seq data analysis☆12Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆13Updated 7 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆28Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆17Updated last year