plger / pipeCompLinks
A R framework for pipeline benchmarking, with application to single-cell RNAseq
☆42Updated 4 years ago
Alternatives and similar repositories for pipeComp
Users that are interested in pipeComp are comparing it to the libraries listed below
Sorting:
- R package containing the Cerebro application.☆40Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- ☆43Updated 5 years ago
- Normalize CITEseq Data☆67Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- ☆56Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 3 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- ☆48Updated last year
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆30Updated 7 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 3 months ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago