plger / pipeComp
A R framework for pipeline benchmarking, with application to single-cell RNAseq
☆41Updated 3 years ago
Alternatives and similar repositories for pipeComp:
Users that are interested in pipeComp are comparing it to the libraries listed below
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- ☆29Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Clone identification from single-cell data☆60Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- R package containing the Cerebro application.☆40Updated 3 years ago
- ☆29Updated 4 months ago
- ☆38Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆39Updated last week
- Toolkit for Single-Cell Velocity☆54Updated 2 weeks ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆30Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆11Updated last year
- ☆39Updated 3 years ago
- ☆45Updated 11 months ago
- Identify and correct invalid gene symbols☆56Updated 2 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- ☆53Updated 4 years ago
- ☆12Updated 8 months ago
- ☆56Updated 4 months ago