plger / pipeComp

Related projects: ⓘ

• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆38Updated 3 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆31Updated 2 years ago
• diazlab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆73Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆60Updated 2 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆40Updated 10 months ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆38Updated 10 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆21Updated 4 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆54Updated 4 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆36Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆36Updated 3 years ago
• lmweber / BestPracticesST
  'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book
  ☆34Updated this week
• PoolLab / generecovery
  ☆29Updated last year
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆57Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆55Updated 4 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆35Updated last year
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆19Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆32Updated last year
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆46Updated last year
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆45Updated 7 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆25Updated 2 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆35Updated last year
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 4 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆18Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆54Updated 6 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆51Updated last month
• JunyueC / sci-fate_analysis
  Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
  ☆24Updated 4 years ago
• UPSUTER / GEMLI
  ☆25Updated 3 weeks ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago