MarioniLab / scHOT2019
Instructions and analysis scripts for single cell Higher Order Testing (scHOT)
☆9Updated 4 years ago
Alternatives and similar repositories for scHOT2019:
Users that are interested in scHOT2019 are comparing it to the libraries listed below
- ☆10Updated last year
- Pairwise Hierarchical Model☆17Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆14Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Differential Correlation across Ranked Samples☆12Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated this week
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- ☆12Updated last year
- Code for EpiMap data browser☆14Updated 10 months ago
- CellAnn☆12Updated last year
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 4 months ago
- Automatic selection of number of principal components☆15Updated 2 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 4 years ago