Alternatives and similar repositories for python-gprofiler

Users that are interested in python-gprofiler are comparing it to the libraries listed below

• broadinstitute / dropviz
  Shiny app for visualization, exploration of mouse brain single cell gene expression
  ☆11Updated 7 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 6 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 7 years ago
• davismcc / workshop-scRNAseq-oxford-sep2016
  scRNA-seq workshop in Oxford on 9 September 2016
  ☆11Updated 9 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆13Updated 2 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• mararie / lionessR
  Single sample network reconstruction in R
  ☆23Updated 5 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆28Updated 2 months ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆11Updated 6 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 3 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 6 years ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆13Updated last month
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• yasinkaymaz / HieRFIT
  Hierarchical Random Forest for Information Transfer
  ☆13Updated 4 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆24Updated 5 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 2 weeks ago
• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 weeks ago
• ELELAB / MoonlightR
  ☆17Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated this week
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago