BIMSBbioinfo / netSmooth
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
☆27Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for netSmooth
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆22Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 3 months ago
- ☆11Updated 9 months ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 2 weeks ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- ☆13Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Fast motif matching in R☆43Updated 9 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 4 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆10Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆11Updated last year