BIMSBbioinfo / netSmooth
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
☆27Updated 9 months ago
Alternatives and similar repositories for netSmooth:
Users that are interested in netSmooth are comparing it to the libraries listed below
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- ☆12Updated last year
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated last month
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- ☆11Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated 10 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago