Alternatives and similar repositories for scRNAseq-SSCs

Users that are interested in scRNAseq-SSCs are comparing it to the libraries listed below

• Morriseylab / scExtras
  ☆14Updated last year
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 4 months ago
• molgenis / scRNA-seq
  ☆18Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 4 years ago
• meichendong / SCDC
  SCDC
  ☆45Updated 4 months ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• gxiaolab / scAllele
  ☆39Updated 2 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆25Updated last year
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 3 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆23Updated last year
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆22Updated 4 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 6 months ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆17Updated 3 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 2 weeks ago
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• haniffalab / FCA_liver
  All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
  ☆39Updated 5 years ago
• mkarikom / RSoptSC
  Cell-cell communication and lineage inference for scRNA-seq data
  ☆24Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• juliendelile / MouseSpinalCordAtlas
  Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…
  ☆25Updated 5 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆17Updated 2 years ago