nyuhuyang / scRNAseq-SSCs
Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data
☆11Updated 2 years ago
Alternatives and similar repositories for scRNAseq-SSCs:
Users that are interested in scRNAseq-SSCs are comparing it to the libraries listed below
- ☆18Updated last year
- ☆12Updated 9 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆21Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- ☆33Updated last year
- ☆13Updated 7 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆16Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- ☆16Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 5 months ago