A list of scRNA-seq analysis tools
☆811Jul 29, 2026Updated last week
Alternatives and similar repositories for scRNA-seq_notes
Users that are interested in scRNA-seq_notes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNAseq analysis notes from Ming Tang☆828Dec 2, 2024Updated last year
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,828Aug 1, 2026Updated last week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,584Dec 11, 2022Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- ☆662Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆341Updated this week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆670Jun 1, 2026Updated 2 months ago
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆667Mar 11, 2026Updated 5 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆444Jul 28, 2026Updated 2 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆680Nov 14, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆241Mar 2, 2026Updated 5 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆228Updated this week
- scATAC-seq data analysis tools and papers☆132Jul 1, 2025Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- Community-provided extensions to Seurat☆370Jun 29, 2026Updated last month
- tools and notes for spatial omics☆368Feb 26, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆233Aug 1, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of single cell RNA-seq data course☆683Apr 11, 2022Updated 4 years ago
- https://www.sc-best-practices.org☆1,241Updated this week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆489Jun 16, 2026Updated last month
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- R toolkit for single cell genomics☆2,783Jul 14, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆257Jun 28, 2026Updated last month
- ☆861Apr 20, 2025Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆244May 8, 2023Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆183Jun 10, 2024Updated 2 years ago