ati-lz / HCA_BenchmarkingLinks
This repository contains HCA Benchmarking codes
☆26Updated 5 years ago
Alternatives and similar repositories for HCA_Benchmarking
Users that are interested in HCA_Benchmarking are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆12Updated 6 years ago
- ☆29Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆25Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆47Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆39Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Tools for assessing clustering robustness☆25Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- ☆48Updated last year
- R package for Bioconductor submission☆37Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year