ati-lz / HCA_Benchmarking
This repository contains HCA Benchmarking codes
☆26Updated 5 years ago
Alternatives and similar repositories for HCA_Benchmarking:
Users that are interested in HCA_Benchmarking are comparing it to the libraries listed below
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆12Updated 9 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆29Updated 2 years ago
- ☆29Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- R package for Bioconductor submission☆34Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 10 months ago
- ☆41Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆49Updated 9 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆18Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago