dezordi / ViralFlow
Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM
☆29Updated last year
Alternatives and similar repositories for ViralFlow:
Users that are interested in ViralFlow are comparing it to the libraries listed below
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 6 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆75Updated 6 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆32Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆90Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆60Updated 3 months ago
- PHANOTATE: a tool to annotate phage genomes.☆73Updated 3 months ago
- A toolkit for prokaryotic comparative genomics☆46Updated 2 months ago
- ☆68Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆116Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 2 months ago
- Bioinformatics tool for Locus Visualisation☆92Updated 2 weeks ago
- Standard database for the TBProfiler tool☆29Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆113Updated this week
- Reorients assembled microbial sequences☆115Updated this week
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- ☆27Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 7 months ago
- IS mapping software☆53Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆93Updated 3 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- BEAV: Bacterial Element Annotation reVamped☆63Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆91Updated last year