dezordi / ViralFlow

Related projects ⓘ

Alternatives and complementary repositories for ViralFlow

• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆28Updated 3 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆69Updated last month
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆70Updated last year
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆67Updated 2 months ago
• BackofenLab / CRISPRidentify
  ☆25Updated last week
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆61Updated last week
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆19Updated 4 years ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆87Updated 3 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• lauralwd / metagenomicspractical
  Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…
  ☆12Updated 2 years ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆56Updated 2 months ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆49Updated 2 months ago
• EBI-Metagenomics / mettannotator
  ☆57Updated this week
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆73Updated this week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• egonozer / in_silico_pcr
  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
  ☆37Updated 4 years ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆61Updated this week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆87Updated last month
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆72Updated 2 weeks ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 3 months ago
• ngs-fzb / MTBseq_source
  MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…
  ☆41Updated 3 months ago
• lmrodriguezr / enveomics
  Scripts and libraries for Environmental Genomics
  ☆37Updated 9 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆77Updated 2 weeks ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆63Updated 3 weeks ago