Alternatives and similar repositories for smot

Users that are interested in smot are comparing it to the libraries listed below

• flu-crew / octoFLU
  Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.
  ☆11Updated 8 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated 4 months ago
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated last year
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆28Updated this week
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆39Updated last week
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated this week
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆39Updated 9 months ago
• Wytamma / beastiary
  Real time and remote MCMC trace monitoring with BEASTIARY.
  ☆20Updated 3 months ago
• Arcadia-Science / metagenomics
  A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
  ☆37Updated 2 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆37Updated 3 months ago
• chrisruis / bammix
  Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures
  ☆13Updated 3 years ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated 2 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 10 months ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆40Updated 2 weeks ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated last week
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆25Updated last month
• MDU-PHL / pango-collapse
  app to collapse Pango lineages for reporting
  ☆12Updated last year
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆48Updated 10 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 5 months ago
• iqbal-lab-org / viridian
  ☆22Updated 5 months ago
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last month
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆63Updated 2 months ago
• dhelekal / CaveDive
  ☆17Updated last year
• jlumpe / gambit
  A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
  ☆34Updated 9 months ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year