Simple Manipulation Of Trees
☆13Aug 16, 2025Updated last year
Alternatives and similar repositories for smot
Users that are interested in smot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆16Dec 11, 2024Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 4 months ago
- Explore and analyze biological sequence data☆19Aug 1, 2024Updated 2 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆18May 19, 2023Updated 3 years ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆16Apr 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated 3 months ago
- flu utilities☆12Feb 1, 2023Updated 3 years ago
- A Rust-based library for phylogenetic analysis and manipulation☆22Aug 8, 2026Updated 2 months ago
- Easily build an UShER tree of genomes for any virus in RefSeq/GenBank☆11Jun 22, 2026Updated 4 months ago
- baltic - Backronymed Adaptable Lightweight Tree vIsualisation Code for molecular phylogeny manipulation, analysis and visualisation.☆133Updated this week
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Oct 19, 2026Updated 2 weeks ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 4 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Jun 29, 2023Updated 3 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated 2 months ago
- PCR primer scheme definitions☆12Sep 8, 2026Updated last month
- ☆30Mar 6, 2025Updated last year
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Bayesian estimation supersedes the t-test☆16Aug 7, 2024Updated 2 years ago
- Coalescent Odds☆11Mar 1, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Phylogenetic Likelihood Library 2 - experimental☆12May 12, 2025Updated last year
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 5 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆26Feb 26, 2026Updated 8 months ago
- Repository of common bioinformatics scripts☆39Sep 21, 2021Updated 5 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 7 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Oct 26, 2026Updated last week
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆59Updated this week
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- L-system generators and visualizers☆33Nov 1, 2021Updated 5 years ago
- Extend GHC's type checker with user-defined rules, without writing a type checker plugin.☆19Sep 20, 2021Updated 5 years ago
- Repo for PrimerSchemes☆22Oct 27, 2026Updated last week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 6 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago